PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12722s0012.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 276aa    MW: 31570.5 Da    PI: 10.2221
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12722s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-164288148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          r+rWT  Ed++l ++v+  G++ W+ I ++m+ gRt+k c+srw+++l
  Bostr.12722s0012.1.p 42 RNRWTLSEDLKLRELVAVSGPRKWTHIGKKMQ-GRTAKTCRSRWFNHL 88
                          89******************************.*************97 PP
2Myb_DNA-binding33.69.1e-1196139348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           ++T  E ++l++a+++lG++ W++Ia+ +  gR +  +  +w+ ++
  Bostr.12722s0012.1.p  96 AFTDKEGKKLLKAHRELGSK-WSKIAKLFH-GRNDRAVNKHWHRLM 139
                           79******************.*********.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.1933792IPR017930Myb domain
SuperFamilySSF466896.25E-2440135IPR009057Homeodomain-like
SMARTSM007174.3E-134190IPR001005SANT/Myb domain
PfamPF002491.3E-144288IPR001005SANT/Myb domain
CDDcd001674.85E-114488No hitNo description
Gene3DG3DSA:1.10.10.602.6E-214495IPR009057Homeodomain-like
PROSITE profilePS5129413.76593143IPR017930Myb domain
SMARTSM007176.9E-793141IPR001005SANT/Myb domain
CDDcd001673.19E-596139No hitNo description
PfamPF002499.5E-996138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-1796144IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
ILILHVSQNT SILQRPLNEV EENNALLRRL HQEEEKKKEK QRNRWTLSED LKLRELVAVS  60
GPRKWTHIGK KMQGRTAKTC RSRWFNHLDP SINNDAFTDK EGKKLLKAHR ELGSKWSKIA  120
KLFHGRNDRA VNKHWHRLMK QKLKKQSTCP HERTANDKTE DSDLGFTDSV RDESTEINNS  180
SWEMPQEETT DLKAKYLKEA MQYSARHHHF SNFPAVSLAM FTPHVSICQQ FTPHVSISQP  240
SSSSSSSSSS SSSKAEDTKA NIPPKFIDFL GVGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-25451437105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-254514330128MYB TRANSFORMING PROTEIN
1mse_C3e-25451437105C-Myb DNA-Binding Domain
1msf_C3e-25451437105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12722s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451793.11e-104PREDICTED: transcription factor WER-like
TrEMBLD7MJE05e-75D7MJE0_ARALL; Uncharacterized protein
STRINGBostr.12722s0012.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1909957
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.23e-62myb domain protein 110