PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13083s0032.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 224aa    MW: 25246.9 Da    PI: 8.708
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13083s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-1765107347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++T+eE+e+l++a++  G++ W++Iar+++ gRt++ +k++++  
  Bostr.13083s0032.1.p  65 PFTEEEEEKLLKAHAIQGNR-WASIARKFP-GRTDNAVKNHFHVM 107
                           79******************.*********.***********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.59258112IPR017930Myb domain
SMARTSM007172.1E-1462110IPR001005SANT/Myb domain
SuperFamilySSF466893.09E-1362110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-1765105IPR009057Homeodomain-like
PfamPF002491.7E-1465106IPR001005SANT/Myb domain
CDDcd001674.39E-677108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
VRDRDRDKLS MEVSGGSKSD ENNKSSCQRG HWRLKEDDKL RKLVAQIRSQ ELEFHCSTFQ  60
GTIRPFTEEE EEKLLKAHAI QGNRWASIAR KFPGRTDNAV KNHFHVMKAR RKREGGASNT  120
SYTLPSLNNL QFGSWRYRTM HTQASFPYDN PDLGSSSVSN DRHGSHLGNT SLVGLDKNHI  180
FHRTLDKSSL EDGLTSNLAD VGGENENDNV TFIYFLGVGL DSH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13083s0032.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885886.11e-100transcription factor MYB117
TrEMBLD7L0452e-98D7L045_ARALL; Uncharacterized protein
STRINGBostr.13083s0032.1.p1e-166(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3035022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.12e-48myb domain protein 69