PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.13129s0015.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 134aa MW: 15202.7 Da PI: 10.0852

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.13129s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.7	3.1e-11	55	126	16	90
EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 l +p++ ++++ ++ +++l++ +++g +sW+v + r +++ ++++GW++ +++ + gD++ F+l++ +e Bostr.13129s0015.1.p 55 LAIPRSASNDYM--PRVQTMLKIHHPDGkKSWDVGF--RVTKRVDLISGGWRRLCREYPIVFGDTCKFTLIKPHEL 126 789999887775..456679*****999**..89988899*********************9985444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.14E-17	36	131	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.7E-13	37	130	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.77	40	133	IPR003340	B3 DNA binding domain
SMART	SM01019	2.5E-13	43	133	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-8	54	126	IPR003340	B3 DNA binding domain
CDD	cd10017	4.01E-8	55	129	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MASNPEFLKC NGERKQESFF KVLNMVSIQR DYAGASSSSI PGFNIFISKS YLIYLAIPRS 60 ASNDYMPRVQ TMLKIHHPDG KKSWDVGFRV TKRVDLISGG WRRLCREYPI VFGDTCKFTL 120 IKPHELLLVV SNP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.13129s0015.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010452977.1	4e-53	PREDICTED: B3 domain-containing protein REM23-like
Swissprot	Q9LXE1	6e-44	REM23_ARATH; B3 domain-containing protein REM23
TrEMBL	D7M272	5e-48	D7M272_ARALL; Predicted protein
STRING	Bostr.13129s0015.1.p	8e-96	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09780.1	2e-46	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.13129s0015.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]