PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0062.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 389aa    MW: 43220.8 Da    PI: 4.4459
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.71.5e-4661341129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           l+pGfrFhPtd elv +yLk+k+ g+kl + ++i+evdiyk+eP dLp  + +k+++ +w+fF++r+kkya+g r+nrat+ gyWk+tg
  Bostr.13129s0062.1.p   6 LAPGFRFHPTDVELVRYYLKRKILGNKLLV-DAIAEVDIYKFEPPDLPdmSYIKSGDLKWHFFCPREKKYASGLRANRATECGYWKTTG 93 
                           579************************999.89**************96347888889******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                           k+++vl+ ++e+vg  ktLv++ g++p+g++tdWv+heyrle
  Bostr.13129s0062.1.p  94 KERPVLC-NSEVVGKIKTLVYHFGKSPNGVRTDWVIHEYRLE 134
                           *******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-573156IPR003441NAC domain
PROSITE profilePS5100551.8076156IPR003441NAC domain
PfamPF023651.3E-248133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGKTQLAPGF RFHPTDVELV RYYLKRKILG NKLLVDAIAE VDIYKFEPPD LPDMSYIKSG  60
DLKWHFFCPR EKKYASGLRA NRATECGYWK TTGKERPVLC NSEVVGKIKT LVYHFGKSPN  120
GVRTDWVIHE YRLEDKVLTQ TNVPQDTYVV CVLFKKDGPG PRNGAQYGAP FREEDWSDGE  180
ERTDVPTTSN PTDLHEPSKE TSLAVTAADD PSKDCFGGMI SESCVSDFLP TTTNTTSKLP  240
DPSDAANTHM SAAPLAETLQ TPNNNCDDLY SMLDLFDDDE EFLGFTNNEA IHDPGVSASV  300
CLEEGIFDGL PDLSNMHSNM ARTSSYDLVE NSELYLELQD LTDPLNPQTG NVNDSRSSYP  360
NNQGHFDFSA DNDNPCGFSA NVRHGPDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-42615615168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0062.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3172170.0AK317217.1 Arabidopsis thaliana AT5G09330 mRNA, complete cds, clone: RAFL22-35-P15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287905.10.0NAC domain-containing protein 82
SwissprotQ9FY820.0NAC82_ARATH; NAC domain-containing protein 82
TrEMBLR0HAY90.0R0HAY9_9BRAS; Uncharacterized protein
STRINGBostr.13129s0062.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.40.0NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]