PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0196.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 333aa    MW: 37416.5 Da    PI: 5.0498
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0196.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-181461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WTteEd++l+ +++ +G g+W+ I+++ g+ R++k+c++rw +yl
  Bostr.13129s0196.1.p 14 RGAWTTEEDKKLISYIHDHGEGSWRDIPEKAGLQRCGKSCRLRWTNYL 61
                          89********************************************97 PP
2Myb_DNA-binding22.52.7e-0767106148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg ++ eE+++++ +++  G++       +++ +Rt++++k++w+++l
  Bostr.13129s0196.1.p  67 RGEFSYEEEQIIIMLHASRGNK-------HLP-KRTDNEVKNYWNTHL 106
                           899*****************99.......***.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129424.661965IPR017930Myb domain
SuperFamilySSF466895.24E-2311102IPR009057Homeodomain-like
SMARTSM007174.9E-141363IPR001005SANT/Myb domain
PfamPF002492.7E-171461IPR001005SANT/Myb domain
CDDcd001671.50E-111661No hitNo description
Gene3DG3DSA:1.10.10.604.8E-1665110IPR009057Homeodomain-like
SMARTSM007175.9E-466108IPR001005SANT/Myb domain
PROSITE profilePS5129411.92966110IPR017930Myb domain
PfamPF002495.4E-667106IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009625Biological Processresponse to insect
GO:0009733Biological Processresponse to auxin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSKRPCCIGE GLKRGAWTTE EDKKLISYIH DHGEGSWRDI PEKAGLQRCG KSCRLRWTNY  60
LKPDIKRGEF SYEEEQIIIM LHASRGNKHL PKRTDNEVKN YWNTHLKKRL IDNGIDPVTH  120
KPLASSSPSL ANPKKFDSQE ESNPDEHSSQ WSSTNPVPLP LSSSFNSTKP EISSDETLIE  180
SAFLSCKKRF ERSSSTSRLL NKVAARAASM GKILSTSIEG TLRSPTSSSC LPNSFSQSSE  240
HMIDNKEDLG TSIDFSIPEY DFPQFLEQFI NDDNEAENIG GCNQDLLMSD VSSTFVDEDN  300
IIGDITSWST YLLDHPNFMY EADQDSGDKN FL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-191211025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in determining the spatial distribution of aliphatic glucosinolates (AGLSs) within the leaf, mostly short chained. Together with MYB28/HAG1 and MYB29/HAG3, promotes aliphatic glucosinolate biosynthesis and represses indolic glucosinolate biosynthesis, but could not activate AGSL biosynthesis on its own. {ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:20348214, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:23943862}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0196.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by auxin (IAA) and jasmonic acid (JA). Accumulates upon mechanical stimuli (e.g. wounding) in inflorescence. Down-regulated by sulfur-deficient stress. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:23792303}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507120.0AY350712.1 Arabidopsis arenosa clone BAC Aer6D24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871286.10.0transcription factor MYB76
RefseqXP_020876086.10.0transcription factor MYB76
SwissprotQ9SPG50.0MYB76_ARATH; Transcription factor MYB76
TrEMBLD7M0L70.0D7M0L7_ARALL; Predicted protein
STRINGBostr.13129s0196.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37871860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07700.10.0myb domain protein 76
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  3. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]