PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.13129s0211.1.p

Common Name

Bd5g07500, PEI1

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

C3H

Protein Properties

Length: 247aa MW: 28337.7 Da PI: 7.4533

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.13129s0211.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	98	117	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ G C++Gd+C FaHg Bostr.13129s0211.1.p 98 CPAFRN-GSCHRGDSCEFAHG 117 666666.*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	7.1E-4	92	118	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.634	92	119	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.1E-6	97	117	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-5	98	120	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	19	127	150	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MLKSASPMAF YDIGEQQYST LGYIVSKPGI AEAYDLDHPI PTINNAIYGS DEFRMYAYKI 60 KRCPRTRSHD WTECPYAHRG EKATRRDPRR YTYCAVACPA FRNGSCHRGD SCEFAHGVFE 120 YWLHPARYRT RACNAGNMCQ RKVCFFAHAP EQLRQSEGKH RCRYAYRPVR ARGGNGDGVA 180 MRFDGEDYDT SRSPEKSGKG DLDSNEEKVL LKCWTSMTIV DDHYQRSDLD LDLDLSHIDW 240 ISELVD*

Functional Description ? help Back to Top
Source	Description
UniProt	Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269\|PubMed:9501112}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.13129s0211.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY292861	0.0	AY292861.1 Boechera drummondii zing finger transcription factor PEI1 (PEI1), pollen specific glycine-rich protein GRP17 (GRP17), pollen specific glycine-rich protein GRP16 (GRP16), pollen specific glycine-rich protein GRP19 (GRP19), pollen specific glycine-rich protein GRP20 (GRP20), transcription-factor-like protein (Bd5g07580), and WD repeat-like protein (Bd5g07590) genes, complete cds; and oleosin (Bd5g07600) and F box protein family (Bd5g07610) genes, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006286651.1	1e-166	zinc finger CCCH domain-containing protein 54
Swissprot	O65036	1e-162	C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBL	Q6WEQ1	1e-175	Q6WEQ1_BOEST; Zing finger transcription factor PEI1
STRING	Bostr.13129s0211.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11527	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07500.1	1e-159	C3H family protein

Link Out ? help Back to Top
Phytozome	Bostr.13129s0211.1.p

Publications ? help Back to Top
Schein M,Yang Z,Mitchell-Olds T,Schmid KJ Rapid evolution of a pollen-specific oleosin-like gene family from Arabidopsis thaliana and closely related species. Mol. Biol. Evol., 2004. 21(4): p. 659-69 [PMID:14739246]