PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0259.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 306aa    MW: 34264.3 Da    PI: 9.6821
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0259.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.1e-31119177260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           dDgynWrKYGqK+vkgse+prsY++Ct+++C +kkkve+s   ++++e++Y+g+Hnh+k
  Bostr.13129s0259.1.p 119 DDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQITETVYKGSHNHPK 177
                           8********************************************************85 PP
2WRKY106.41.5e-33236293259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+ +dp+ v++tYeg+Hnh+
  Bostr.13129s0259.1.p 236 EDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCCVRKHVERAFQDPESVITTYEGKHNHQ 293
                           8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-28109178IPR003657WRKY domain
PROSITE profilePS5081124.696113178IPR003657WRKY domain
SuperFamilySSF1182901.57E-25114178IPR003657WRKY domain
SMARTSM007744.9E-34118177IPR003657WRKY domain
PfamPF031061.1E-23119176IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-36220295IPR003657WRKY domain
SuperFamilySSF1182904.05E-29227295IPR003657WRKY domain
PROSITE profilePS5081135.944230295IPR003657WRKY domain
SMARTSM007747.5E-38235294IPR003657WRKY domain
PfamPF031062.5E-25236293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070370Biological Processcellular heat acclimation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGSFDHQRAV PKFKSATPSP LSPLPYFTMP PGLTPADFLD SPLLFTSSNI LPSPTTGTFP  60
AQSLNWKNKG LLIDQNEIKY EDGKKNLDFS FTNNHTTPPL FLPSDTSKSE SLSSNKTSDD  120
GYNWRKYGQK QVKGSENPRS YFKCTYPNCL TKKKVETSLV KGQITETVYK GSHNHPKPQS  180
TKRSASTAVA AHQNSSHGNG QDIGEDEADA KRWKREENVK EPRVVVQTTS DIDILEDGYR  240
WRKYGQKVVK GNPNPRSYYK CTFTGCCVRK HVERAFQDPE SVITTYEGKH NHQIPTPRIG  300
HTSGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35104295377Probable WRKY transcription factor 4
2lex_A1e-35104295377Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00494DAPTransfer from AT5G07100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0259.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2246990.0AF224699.1 Arabidopsis thaliana WRKY DNA-binding protein 26 (WRKY26) mRNA, complete cds.
GenBankBT0263490.0BT026349.1 Arabidopsis thaliana At5g07100 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876110.10.0probable WRKY transcription factor 26 isoform X2
SwissprotQ9C5T30.0WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLD7LZX60.0D7LZX6_ARALL; WRKY DNA-binding protein 26
STRINGBostr.13129s0259.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152911518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.11e-174WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]