PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0263.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-YC
Protein Properties Length: 297aa    MW: 33278.2 Da    PI: 5.316
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0263.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC56.65.8e-186861898
                 NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                          ++++P arikki++adedv +i+  +Pvl+ska elf+ +l   ++  + +   +t+    ++++v+r ++fdfl ++v +
  Bostr.13129s0263.1.p  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTVSSLHLKNCVERYNVFDFLREVVSK 86
                          5789************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-25372IPR009072Histone-fold
SuperFamilySSF471131.17E-19499IPR009072Histone-fold
PfamPF008084.3E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDHT YEITLQRGAK  60
TVSSLHLKNC VERYNVFDFL REVVSKVPDY GHGHGHSQGH ADVAMDDRSI SKRRKPTGDE  120
INDSDEELKK TKVHEMGHAG PSGRGRGRGR GRGRGRSAKT AERELLHREM EIEPTILVAP  180
PLSQDEIKMP APPQQLTLHD SEKKDVDERS NHTKQELQSP EEGNDTNSGL GRGFDLNTQS  240
LDIEIKPSVI TASREMKPEE YPCWSNPDMG NIDPMQLANM SKSLDEDDED YDEEES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A9e-20272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145154RGRGRGRGRG
2145155RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0263.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8186222e-34KC818622.1 Brassica napus transcription factor subunit NF-YC11A (NF-YC11A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423260.11e-174PREDICTED: dr1-associated corepressor homolog
TrEMBLD7LZX11e-164D7LZX1_ARALL; Uncharacterized protein
STRINGBostr.13129s0263.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35062458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-103nuclear factor Y, subunit C11