PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.13129s0278.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bZIP

Protein Properties

Length: 331aa MW: 36940.5 Da PI: 9.274

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.13129s0278.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	6.6e-10	45	86	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Bostr.13129s0278.2.p 45 QKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 86 5888*************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.3E-8	40	89	No hit	No description
SMART	SM00338	1.9E-7	42	105	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	44	88	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.4E-7	46	86	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.56E-7	46	89	No hit	No description
PROSITE pattern	PS00036	0	49	64	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.5E-33	128	203	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0009863	Biological Process	salicylic acid mediated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MGDTSPRTSV STDGDTDHNN IMFDEGHLGI GASDSSDRSK GKMDQKTLRR LAQNREAARK 60 SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG DQAHSTAGDG AMAFDVEYRR 120 WQEDKNRQMK ELSAALDSHA TDAELRIIVD GVIAHYEELY RIKGNAAKND VFHLLSGMWK 180 TPAERCFLWL GGFRSSELLK LIANQLEPLT EQQSLDINNL QQSSRQTEDA LSQGMDNLQQ 240 SLADTLSSGT LGSSTSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT YQQMVRILTT 300 RQSARALLAV HNYSLRLRAL SSLWLARPRE *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00493	DAP	Transfer from AT5G06960	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.13129s0278.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY058830	0.0	AY058830.1 Arabidopsis thaliana AT5g06960/MOJ9_13 mRNA, complete cds.
GenBank	AY143864	0.0	AY143864.1 Arabidopsis thaliana At5g06960/MOJ9_13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010491292.1	0.0	PREDICTED: transcription factor TGA5
Refseq	XP_010491293.1	0.0	PREDICTED: transcription factor TGA5
Swissprot	Q39163	0.0	TGA5_ARATH; Transcription factor TGA5
TrEMBL	D7LZV9	0.0	D7LZV9_ARALL; Ocs-element binding factor 5
STRING	Bostr.13129s0278.1.p	0.0	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06960.2	0.0	OCS-element binding factor 5

Link Out ? help Back to Top
Phytozome	Bostr.13129s0278.2.p

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234] Walper E,Weiste C,Mueller MJ,Hamberg M,Dröge-Laser W Screen Identifying Arabidopsis Transcription Factors Involved in the Response to 9-Lipoxygenase-Derived Oxylipins. PLoS ONE, 2016. 11(4): p. e0153216 [PMID:27073862] Huang LJ, et al. Ectopically expressed glutaredoxin ROXY19 negatively regulates the detoxification pathway in Arabidopsis thaliana. BMC Plant Biol., 2016. 16(1): p. 200 [PMID:27624344]