PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.13129s0288.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bZIP

Protein Properties

Length: 462aa MW: 51064.6 Da PI: 7.1886

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.13129s0288.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.3	1.1e-10	162	190	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le Bostr.13129s0288.1.p 162 KTLRRLAQNREAARKSRLRKKAYVQQLES 190 7789***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.8E-9	153	206	No hit	No description
SMART	SM00338	5.6E-7	158	246	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.737	160	204	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.24E-22	162	214	No hit	No description
Pfam	PF00170	9.6E-8	162	192	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.01E-7	162	203	No hit	No description
PROSITE pattern	PS00036	0	165	180	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-30	255	329	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MQGHHQNHHQ HISSASATSS SHGNFMNKDG YDIGEIDPSL FLYLDGQGHH DPPSTAPPPL 60 PHHHHTTQNL AMRPPTSTLN IFPSQPMHIE PAPSSTPNTD NAKLVPAAQP SGSTRPSSEP 120 SMDLTNHSQF QPPQASKSIK KEGSRKGPAS SDHDIPKSSD PKTLRRLAQN REAARKSRLR 180 KKAYVQQLES CRIKLTQLEQ EIQRARSQGV FFGGSLIGGD QQQGGLPIGP GHISSEAAVF 240 DMEYARWLEE QQRLLTELRV ATQEHLAENE LRMFVDTCLA HYDHLINLKA MVAKTDVFHL 300 ISGAWKTPAE RCFLWMGGFR PSEIIKVIVN QIEPLTEQQI VGICGLQQST QEAEEALSQG 360 LEALNQSLSD SIVSDSLSPA SAPLPPHLAN FMSHMSLALN KLSALEGFVL QADNLRHQII 420 HRLNQLLTTR QEARCLLAVA EYFHRLQALS SLWLARPRQD G*

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MQGHHQNHHQ HISSASATSS SHGNFMNKDG YDIGEIDPSL FLYLDGQGHH DPPSTAPPPL  60
PHHHHTTQNL AMRPPTSTLN IFPSQPMHIE PAPSSTPNTD NAKLVPAAQP SGSTRPSSEP  120
SMDLTNHSQF QPPQASKSIK KEGSRKGPAS SDHDIPKSSD PKTLRRLAQN REAARKSRLR  180
KKAYVQQLES CRIKLTQLEQ EIQRARSQGV FFGGSLIGGD QQQGGLPIGP GHISSEAAVF  240
DMEYARWLEE QQRLLTELRV ATQEHLAENE LRMFVDTCLA HYDHLINLKA MVAKTDVFHL  300
ISGAWKTPAE RCFLWMGGFR PSEIIKVIVN QIEPLTEQQI VGICGLQQST QEAEEALSQG  360
LEALNQSLSD SIVSDSLSPA SAPLPPHLAN FMSHMSLALN KLSALEGFVL QADNLRHQII  420
HRLNQLLTTR QEARCLLAVA EYFHRLQALS SLWLARPRQD G*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.13129s0288.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ132742	0.0	HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023637542.1	0.0	transcription factor TGA10 isoform X5
Swissprot	E3VNM4	0.0	TGA10_ARATH; Transcription factor TGA10
TrEMBL	A0A1J3I3I6	0.0	A0A1J3I3I6_NOCCA; Transcription factor HBP-1b(C1)
STRING	Bostr.13129s0288.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7207	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Bostr.13129s0288.1.p

Publications ? help Back to Top
Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]