PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0295.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 242aa    MW: 25461.7 Da    PI: 10.204
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0295.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-073861225
                          -S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                          k ++C  f+ t  C++Gd+C+F H
  Bostr.13129s0295.1.p 38 KSKPCTKFFSTSGCPFGDNCHFLH 61
                          7789******************** PP
2zf-CCCH38.91.4e-12207232127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ykt++C++f++ G C yGdrC+FaHg+
  Bostr.13129s0295.1.p 207 YKTKICDRFSK-GNCTYGDRCHFAHGE 232
                           9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0843664IPR000571Zinc finger, CCCH-type
SMARTSM003560.0683663IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-63763IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-53861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-83861IPR000571Zinc finger, CCCH-type
SMARTSM003225.1E-11113183IPR004087K Homology domain
SuperFamilySSF547915.41E-14113183IPR004088K Homology domain, type 1
PROSITE profilePS5008414.11114178IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-15115182IPR004088K Homology domain, type 1
PfamPF000131.6E-10116180IPR004088K Homology domain, type 1
CDDcd001059.77E-12116178No hitNo description
Gene3DG3DSA:4.10.1000.106.8E-17201236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.028206233IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-8206232IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-9206236IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-10207232IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDTRKRGRPE AAASHNSNGE FKRSKQEMES NSTGLGSKSK PCTKFFSTSG CPFGDNCHFL  60
HYVPGGYDAA AQMKNLRPPV AQVSRNMQGS GGAGGRFSGR GDPGLGPVSI FGASATAKIS  120
VDASLAGAII GKGGIHSKQI CRQTGAKLSI KDHERDPNLK IIELDGSFEQ INVASAMVRE  180
LIGRLGSAKK PHGIGGSEGK PHPGSNYKTK ICDRFSKGNC TYGDRCHFAH GEAELRRSGI  240
A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0295.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0867590.0AY086759.1 Arabidopsis thaliana clone 27460 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873278.11e-163zinc finger CCCH domain-containing protein 52 isoform X1
SwissprotQ9FG301e-162C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLD7LZT81e-162D7LZT8_ARALL; KH domain-containing protein
STRINGBostr.13129s0295.1.p1e-177(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-151C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]