PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0308.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 187aa    MW: 21634.1 Da    PI: 9.7734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0308.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.6e-065274123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          +kC++C +sF+++  L  H++ H
  Bostr.13129s0308.1.p 52 FKCHYCFRSFPTSQALGGHQNAH 74
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.03E-74879No hitNo description
Gene3DG3DSA:3.30.160.602.8E-44878IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.3E-65176IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2615279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009735Biological Processresponse to cytokinin
GO:0009739Biological Processresponse to gibberellin
GO:0010026Biological Processtrichome differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKTHDFMNVN SSSLKERPIR LFGFEFGASQ EESESKDNYN ESINDNNKEK RFKCHYCFRS  60
FPTSQALGGH QNAHKKERQQ TKRFNLHSNA AALFHRHQDH VAACRLFEDR FIVEAAQIND  120
ARLGLLRRYN SSARFNRDGP SYNKYMPLFI GDNQTRPTYV GGSSRHGLFY ESKTNIPDHV  180
SLDLRL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Is not involved in the regulation of trichome branching. Is functionally equivalent to ZFP8. {ECO:0000269|PubMed:17507408}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0308.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin and gibberellin. {ECO:0000269|PubMed:17507408}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0025430.0AP002543.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423315.11e-111PREDICTED: zinc finger protein GIS2-like
SwissprotQ9FG051e-109GIS2_ARATH; Zinc finger protein GIS2
TrEMBLA0A178UCF61e-108A0A178UCF6_ARATH; GIS2
STRINGBostr.13129s0308.1.p1e-137(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146591214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.11e-112C2H2 family protein
Publications ? help Back to Top
  1. Sun L, et al.
    GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
    New Phytol., 2015. 206(1): p. 220-30
    [PMID:25640859]
  2. Kim SY,Hyoung S,So WM,Shin JS
    The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling.
    Plant Mol. Biol., 2018. 96(3): p. 315-326
    [PMID:29335898]