PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0363.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 655aa    MW: 74926.1 Da    PI: 7.8705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0363.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.7e-08470511240
                           SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                           ++W++eE + l ++++++++g   +W+ I++++g+gR+ +++
  Bostr.13129s0363.1.p 470 KPWSKEEIDMLRKGITKFPKGtsqRWEVISEYIGTGRSVEEI 511
                           69***********************************99876 PP
2Myb_DNA-binding248.8e-08598641445
                           S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                           W++  +  lv+a k ++++   +W+++a  ++ g+t  qck ++ 
  Bostr.13129s0363.1.p 598 WSAVQERALVQALKTFPKEtnqRWERVATAVP-GKTMSQCKKKFA 641
                           ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.57E-1973178IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.8E-1996200IPR001623DnaJ domain
SMARTSM002716.5E-1499174IPR001623DnaJ domain
PfamPF002261.0E-16100179IPR001623DnaJ domain
PROSITE profilePS5007617.36100182IPR001623DnaJ domain
CDDcd062571.48E-12100171IPR001623DnaJ domain
PRINTSPR006252.7E-7105123IPR001623DnaJ domain
PRINTSPR006252.7E-7123138IPR001623DnaJ domain
PRINTSPR006252.7E-7154174IPR001623DnaJ domain
PROSITE patternPS006360159178IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.168464519IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.6E-5465511IPR009057Homeodomain-like
SMARTSM007178.3E-6468521IPR001005SANT/Myb domain
SuperFamilySSF466892.99E-7470513IPR009057Homeodomain-like
PfamPF002494.7E-6470511IPR001005SANT/Myb domain
CDDcd001673.55E-4471511No hitNo description
SMARTSM007173.3E-8594646IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-9596650IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-4598643IPR009057Homeodomain-like
PROSITE profilePS500906.98598644IPR017877Myb-like domain
CDDcd001671.45E-5598644No hitNo description
PfamPF002493.4E-6598642IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MQSWGTKSDI KLLTYSNELS DGQAFYASSN CHPVKALNRE PAGHAFHSAA LKLRGCAKEA  60
TGNNEDTDKK VPKEKDDEYI PSYDSHNNKG KKKSGKQQHD HYALLGLGNL RYLATEDQIR  120
KSYREAALKH HPDKLATLLL AEETEEAKQA KKDEIESHFK LIQEAYEILM DSTKRRIFDS  180
TDEFDDEVPT DCAPQDFFKV FGPAFKRNAR WSVNSRVPDL GDENTPLKEV DSFYSYWYAF  240
KSWREFPEEE EHDLEQAESR EEKRWMEREN AKKTQKARKE EYARIRTLVD NAYKKDRRIL  300
KRKEDEKAKK LQKKEAKVMA KKKQEEEAAA AIEEEKRRKE EEAKCAAEAA QLHKRAKEKE  360
KKLLRKERSR LRTLSTPVLS QRLLGITDEH VEDLCMSLNT EQLRKLCDKM ENKEGLALAK  420
VIKNGNSSDD DETESKEEEV QVAIKQNGHI ETNGHVEAKV DTATHQKKEK PWSKEEIDML  480
RKGITKFPKG TSQRWEVISE YIGTGRSVEE ILKATKTVLL QKPDSAKAFD SFLEKRKPAA  540
SIDSPLSTRE ELGEPIIPTK PHEDNNSTKT ETTEQNSKGE ENNNSEPDAA AGSDPDGWSA  600
VQERALVQAL KTFPKETNQR WERVATAVPG KTMSQCKKKF AELKDIIRTK KPTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A5e-1519629920123Zuotin
5dje_B5e-1519629920123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296302RRILKRK
2320338KKKQEEEAAAAIEEEKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0363.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020300.0AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287223.10.0dnaJ homolog subfamily C member 2
TrEMBLR0FE250.0R0FE25_9BRAS; Uncharacterized protein
STRINGBostr.13129s0363.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain