PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0406.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 205aa    MW: 23117.3 Da    PI: 7.4363
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0406.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF404.9e-131350542
                          SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          ++  r+ ++ kR+ng++KK +ELS+LCd+++ +i f  
  Bostr.13129s0406.1.p 13 DQKSRKASLKKRLNGLIKKKNELSILCDVQAFLIFFDR 50
                          567899****************************9964 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.572148IPR002100Transcription factor, MADS-box
CDDcd002663.32E-20285No hitNo description
PRINTSPR004049.1E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-19394IPR002100Transcription factor, MADS-box
PfamPF003192.8E-121354IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MARRKLQLAW TGDQKSRKAS LKKRLNGLIK KKNELSILCD VQAFLIFFDR EEDQLVVWPS  60
PEAAKSLIDN FYSLTDHERN KKAVDHESFI QTIIQKIEKK LADSRKVDKL ISYSGKKMMC  120
LSKEMGPTEQ LDTTVDEGSL GDETLRASNV PSTGWGGNGF NVMETGSIYY IDKWVFVDPE  180
VQNPCDEAHS PTTVNVLRPN YGTI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0406.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423334.12e-89PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A178ULF58e-78A0A178ULF5_ARATH; AGL96
STRINGBostr.13129s0406.1.p1e-152(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.18e-82AGAMOUS-like 96