PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0416.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 190aa    MW: 21251.7 Da    PI: 8.235
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0416.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.18.3e-1225107286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W+++ + +L+ea  ++  +l+ g+l++++ +e+++++     e g  ++ +qCk++++ l+k+yk +k+  +       st+++f++l+
  Bostr.13129s0416.1.p  25 WSEEATATLVEAWGNRYVKLNHGNLRQNDSKEIADAVnsrdGENGRMKTDVQCKNRIDTLKKKYKTEKAKLSP------STWRFFNRLD 107
                           *************************************9999999************************99986......68*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.9E-2223107No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
METTTTTQSK RSGSHRPPLG REDWWSEEAT ATLVEAWGNR YVKLNHGNLR QNDSKEIADA  60
VNSRDGENGR MKTDVQCKNR IDTLKKKYKT EKAKLSPSTW RFFNRLDILI GPVLKKSAGG  120
VVKSVPIVNS NHLNPAGSGS SLEDDDDDWG FDARKHPRVE EVDLSEGSTC RELATAILIS  180
EVWRSLREN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0416.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373321e-127AC237332.1 Arabidopsis lyrata clone JGIFAFI-57L22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288549.12e-96trihelix transcription factor ASIL2
SwissprotQ9LJG83e-28ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLR0FGL56e-95R0FGL5_9BRAS; Uncharacterized protein
STRINGBostr.13129s0416.1.p1e-137(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.16e-92sequence-specific DNA binding transcription factors