PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.13129s0456.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

G2-like

Protein Properties

Length: 257aa MW: 28620 Da PI: 6.9774

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.13129s0456.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.1	1.3e-30	82	135	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Bostr.13129s0456.1.p 82 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 135 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.15E-20	79	139	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.059	79	138	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.7E-31	81	140	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-24	83	135	IPR006447	Myb domain, plants
Pfam	PF00249	8.9E-8	85	134	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MREEDSNWFS KWEEELPSPE ELIPISQSLI TPDLAIAFDL HRHNRENSGQ PLPQTTQPQQ 60 PNSSAEFAGD STGDEPARTL KRPRLVWTPQ LHKRFVDAVA HLGIKNAVPK TIMQLMSVDG 120 LTRENVASHL QKYRLYLKRM QSGGGGGNVG ESDHLFTSSD HFIPSFVPIS TQHQQIAAAT 180 THLQPPSQFL HRQISAANFT SPTKATDQAM FLARQSQQQP VFRPASLHLH SQVANYTQDL 240 ESGAKTVLTL FPTRDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	5e-32	82	138	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00056	PBM	Transfer from AT5G05090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.13129s0456.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005245	1e-158	AB005245.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUG13.
GenBank	AY084791	1e-158	AY084791.1 Arabidopsis thaliana clone 118003 mRNA, complete sequence.
GenBank	AY093188	1e-158	AY093188.1 Arabidopsis thaliana unknown protein (At5g05090) mRNA, complete cds.
GenBank	BT006289	1e-158	BT006289.1 Arabidopsis thaliana At5g05090 mRNA, complete cds.
GenBank	CP002688	1e-158	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010491039.1	1e-146	PREDICTED: transcription factor PCL1-like
Swissprot	O22210	8e-51	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	R0HFE3	1e-141	R0HFE3_9BRAS; Uncharacterized protein
STRING	Bostr.13129s0456.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1549	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05090.1	1e-130	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bostr.13129s0456.1.p

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]