PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13158s0054.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 252aa    MW: 27386.5 Da    PI: 7.4351
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13158s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.5e-18171205135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Bostr.13158s0054.1.p 171 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 205
                           *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.4E-872248IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.543165201IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-15165215IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15168229No hitNo description
Gene3DG3DSA:3.30.50.109.8E-14169203IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.70E-13170217No hitNo description
PROSITE patternPS003440171196IPR000679Zinc finger, GATA-type
PfamPF003206.6E-16171205IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDVYGMSSPD LLRIDDLLDF SNDEIFSSSS STVTSSAASS AASSSFPSEN TFKFPSSVYT  60
SPPLLTDFTH DLCVPSDDAA HLEWLSRFVD DSFSDFPTNS LTMTVRPEIS FTGKPRSRRS  120
RASAPPSVAG TWAPMPESEL CHSVAKPNPK KEYGAESVTA DGGGGGGARR CTHCASEKTP  180
QWRTGPLGPK TLCNACGVRY KSGRLVPEYR PASSPTFVLT QHSNSHRKVM ELRRQKEQQE  240
SCLQIPPFQP R*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13158s0054.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3788810.0AF378881.1 Arabidopsis thaliana AT3g60530/T8B10_190 mRNA, complete cds.
GenBankAY0395320.0AY039532.1 Arabidopsis thaliana AT3g60530/T8B10_190 mRNA, complete cds.
GenBankAY0504760.0AY050476.1 Arabidopsis thaliana AT3g60530/T8B10_190 mRNA, complete cds.
GenBankY136510.0Y13651.1 Arabidopsis thaliana mRNA for GATA transcription factor 4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880430.11e-144GATA transcription factor 4
SwissprotO497431e-138GATA4_ARATH; GATA transcription factor 4
TrEMBLR0FQ221e-137R0FQ22_9BRAS; GATA transcription factor
STRINGBostr.13158s0054.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-128GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]