PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13158s0058.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 312aa    MW: 35431.4 Da    PI: 7.8929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13158s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-05426123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ykC +C ksF +   L  H+r+H
  Bostr.13158s0058.1.p  4 YKCRYCFKSFVNGRALGGHMRSH 26
                          9*********************9 PP
2zf-C2H216.13.2e-05194216123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ykC+ Cgk+F++   L  H  +H
  Bostr.13158s0058.1.p 194 YKCETCGKVFKSYQALGGHRASH 216
                           9************9999998887 PP
3zf-C2H210.80.0016245267123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp+C ++F +   L  H r+H
  Bostr.13158s0058.1.p 245 HECPICFRVFASGQALGGHKRSH 267
                           79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.1E-10326No hitNo description
PfamPF139122.1E-6428IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242426IPR007087Zinc finger, C2H2
SMARTSM003550.024426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-4184219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.1E-10189216No hitNo description
PfamPF139121.8E-11193218IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.427194221IPR007087Zinc finger, C2H2
SMARTSM003550.0071194216IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
PfamPF139121.3E-10245267IPR007087Zinc finger, C2H2
SMARTSM003550.24245267IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.037245267IPR007087Zinc finger, C2H2
PROSITE patternPS000280247267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MENYKCRYCF KSFVNGRALG GHMRSHMPSL HVDGEEEERP SQLSYDETES DVSSSSSKEK  60
RNGSRENDPK FAFTSSVLLE DGESETESSR NVINLTRKRS KRTRKLDSFV TKKVKTSQLG  120
YKPESDPEPP HSSASDTTTE EDLAFCLMML SRDKWKKDKS NKEVVAEIET EEESEEGYNR  180
LLSKMNRITT KGRYKCETCG KVFKSYQALG GHRASHKKNR VSNKTEQRSE TEHDNVVVVA  240
EKRIHECPIC FRVFASGQAL GGHKRSHGIG NLSVNHHHHH QVHQIESAKQ RMIDLNLPAP  300
TEEDEVSVVF Q*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13158s0058.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1183990.0AK118399.1 Arabidopsis thaliana At3g60580 mRNA for putative zinc finger protein, complete cds, clone: RAFL19-65-L22.
GenBankAL1386460.0AL138646.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T8B10.
GenBankBT0052830.0BT005283.1 Arabidopsis thaliana At3g60580 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876568.11e-180zinc finger protein ZAT9
SwissprotQ9M2021e-168ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLD7LRS31e-178D7LRS3_ARALL; Zinc finger family protein
STRINGBostr.13158s0058.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-150C2H2-like zinc finger protein