PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13158s0102.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MIKC_MADS
Protein Properties Length: 173aa    MW: 19600.2 Da    PI: 9.8376
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13158s0102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.3e-21956151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien + rqv fskR+ g+lKKA+   vLCdae+a+iifs++gklye+s+
  Bostr.13158s0102.1.p  9 KKIENMTSRQVIFSKRKGGLLKKAY---VLCDAEIALIIFSNSGKLYEFSN 56
                          68**********************9...*********************95 PP
2K-box15.29.2e-0777105836
                 K-box   8 sleeakaeslqqelakLkkeienLqreqR 36 
                           ++ e+ ++s++qe++kLk+++e+L r++R
  Bostr.13158s0102.1.p  77 DKLEESTQSWRQEMTKLKSKYESLLRTHR 105
                           4556779*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.497158IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-29157IPR002100Transcription factor, MADS-box
CDDcd002655.86E-33272No hitNo description
SuperFamilySSF554551.83E-24286IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-11323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-181054IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-112338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRGRVEVKK IENMTSRQVI FSKRKGGLLK KAYVLCDAEI ALIIFSNSGK LYEFSNVGIG  60
RTIERYYRCK NNFLDNDKLE ESTQSWRQEM TKLKSKYESL LRTHRLSRPI VKLGGHAGST  120
DFSLQSSHPN YLSDCDVGYF LQIGVQQHYE QGGGSSVSKS NARRDCETNF VQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15166169MEF2 CHIMERA
6byy_B1e-15166169MEF2 CHIMERA
6byy_C1e-15166169MEF2 CHIMERA
6byy_D1e-15166169MEF2 CHIMERA
6bz1_A2e-15166169MEF2 CHIMERA
6bz1_B2e-15166169MEF2 CHIMERA
6bz1_C2e-15166169MEF2 CHIMERA
6bz1_D2e-15166169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13158s0102.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU201832e-89U20183.1 Arabidopsis thaliana MADS-box protein AGL13 (AGL13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402519.12e-64agamous-like MADS-box protein AGL13
SwissprotQ388376e-52AGL13_ARATH; Agamous-like MADS-box protein AGL13
TrEMBLM4DD865e-64M4DD86_BRARP; Uncharacterized protein
STRINGBostr.13158s0102.1.p1e-125(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61120.12e-54AGAMOUS-like 13
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]