PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.13158s0202.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 302aa MW: 34308.2 Da PI: 8.4291

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.13158s0202.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	106	1.9e-33	22	127	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+kv tpsdv+k++rlv+pk++ae++ ++++++ l +ed+sg+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F Bostr.13158s0202.1.p 22 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnstTNDNNKGLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSF 110 89*************************9999455568889********************************************* PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++d+ ++ +l++ ++r+ Bostr.13158s0202.1.p 111 QRDSGNKDKLYIDWRRR 127 99888999****998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-43	11	136	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.09E-32	19	130	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.26E-26	20	116	No hit	No description
SMART	SM01019	1.0E-25	22	128	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-30	22	127	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.663	22	128	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MNQEEEKRIE EASSTMEREH MFDKVVTPSD VGKLNRLVIP KQHAERYFPL DNSTTNDNNK 60 GLLLNFEDRS GNSWRFRYSY WNSSQSYVMT KGWSRFVKDK KLDAGDIVSF QRDSGNKDKL 120 YIDWRRRPKI PDHHQTSHHQ FAGAMFPRFY TFPHPQMPTN YESHNLYHRF HQRDLGIGYY 180 VRSMERSNPT AVIESVPVMM QRRAQVTSRG EKRLRLFGVD MECGGGGGGG SVNSTEEESS 240 SSGGSMPRGS VSMVGAGSLL QLRLVSSDDE SLVAMEAAAS LEDHHFFTKK GKSSLSFDLD 300 T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-64	17	130	3	116	B3 domain-containing transcription factor NGA1
5os9_B	3e-64	17	130	3	116	B3 domain-containing transcription factor NGA1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269\|PubMed:16603651}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.13158s0202.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL138642	0.0	AL138642.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14.
GenBank	BT025866	0.0	BT025866.1 Arabidopsis thaliana At3g61970 mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010512577.1	0.0	PREDICTED: B3 domain-containing transcription factor NGA2
Swissprot	Q9M268	0.0	NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBL	A0A384KUR3	0.0	A0A384KUR3_ARATH; NGA2
TrEMBL	C3VMM3	0.0	C3VMM3_ARATH; NGATHA2
STRING	Bostr.13158s0202.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1307	28	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61970.1	1e-175	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.13158s0202.1.p

Publications ? help Back to Top
Lee BH, et al. The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768]