PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13158s0239.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 281aa    MW: 32243 Da    PI: 7.2634
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13158s0239.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.2e-32122180159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vk+s+fpr+YYrCt++ C vkk+vers +dp++v++tYeg+H+h+
  Bostr.13158s0239.1.p 122 LDDGYKWRKYGQKPVKNSPFPRNYYRCTTTLCDVKKRVERSFSDPSTVITTYEGQHTHP 180
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-33109182IPR003657WRKY domain
SuperFamilySSF1182901.57E-28115182IPR003657WRKY domain
PROSITE profilePS5081130.71117182IPR003657WRKY domain
SMARTSM007742.5E-38122181IPR003657WRKY domain
PfamPF031061.3E-25123180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MENIRVGMPF YDLGQTRVYP LFSDFHDLSA ERYPVGFMDL LDVHRHALTH TPLIQFPTTP  60
NSSSSEAVNG DEKKRDDEEE EEDGEEHQHK TNNRFKSTKS SEQTKMRVPK VSFITKSEVL  120
HLDDGYKWRK YGQKPVKNSP FPRNYYRCTT TLCDVKKRVE RSFSDPSTVI TTYEGQHTHP  180
HPVLIMPKGR SFRSNGSASR AHFGLPTLPP QLLDYNNHLQ QQKGPSSFEI EYINRQEKGF  240
DDDHVVKKSR TRDLLDGAGL VKDHGLLQDV VSSHIIKEEC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-251151831078Probable WRKY transcription factor 4
2lex_A6e-251151831078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13158s0239.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4211550.0AF421155.1 Arabidopsis thaliana WRKY transcription factor 68 (WRKY68) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_567127.11e-145WRKY family transcription factor
RefseqXP_010512623.11e-144PREDICTED: probable WRKY transcription factor 68
SwissprotQ93WV61e-146WRK68_ARATH; WRKY transcription factor 68
TrEMBLA0A178VDY31e-143A0A178VDY3_ARATH; WRKY transcription factor
STRINGBostr.13158s0239.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150681619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62340.11e-147WRKY family protein