PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13208s0037.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-YB
Protein Properties Length: 156aa    MW: 17549.6 Da    PI: 7.6638
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13208s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB168.21e-5245140297
                 NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                           +eqdr+lPianv+rimk++lP nakisk+ak t+qecvsefisfvt+easdkc++ekrkt+ngdd++wa+a+lGf+dy+ +lk+yl++y
  Bostr.13208s0037.1.p  45 KEQDRLLPIANVGRIMKNILPPNAKISKEAKVTMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMANLGFDDYAGQLKKYLHRY 133
                           89*************************************************************************************** PP

                 NF-YB  91 relegek 97 
                           r +egek
  Bostr.13208s0037.1.p 134 RITEGEK 140
                           ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.6E-5238150IPR009072Histone-fold
SuperFamilySSF471131.86E-3947150IPR009072Histone-fold
PfamPF008087.5E-2850114IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.6E-187896No hitNo description
PROSITE patternPS0068508197IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.6E-1897115No hitNo description
PRINTSPR006159.6E-18116134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MAGDYPSFQN PIPRYQNYNF ASSSSHHQHH GLVVEDQQQE ENMIKEQDRL LPIANVGRIM  60
KNILPPNAKI SKEAKVTMQE CVSEFISFVT GEASDKCHKE KRKTVNGDDI CWAMANLGFD  120
DYAGQLKKYL HRYRITEGEK ANHHGKGGSK SSPDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-4344134191Transcription factor HapC (Eurofung)
4g92_B7e-4344134191Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13208s0037.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053091e-154AC005309.3 Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete sequence.
GenBankBT0039681e-154BT003968.1 Arabidopsis thaliana clone RAFL15-27-K05 (R20859) putative CCAAT-box binding trancription factor (At2g47810) mRNA, complete cds.
GenBankBT0050811e-154BT005081.1 Arabidopsis thaliana clone U20859 putative CCAAT-box binding trancription factor (At2g47810) mRNA, complete cds.
GenBankCP0026851e-154CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474925.11e-101PREDICTED: nuclear transcription factor Y subunit B-5
SwissprotO822489e-99NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1J3F4991e-99A0A1J3F499_NOCCA; Nuclear transcription factor Y subunit B-5
STRINGBostr.13208s0037.1.p1e-115(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-101nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]