PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13671s0200.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 206aa    MW: 23293.2 Da    PI: 5.0039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13671s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.2e-162878155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                          + y+G+r++    +Wv+eIr+p     +  +r++lg++ +a++Aa+a++ a+++l+g
  Bostr.13671s0200.1.p 28 PVYRGIRRRN-GDKWVCEIREP-----ThqRRIWLGTYPSADMAARAHDVAALALRG 78
                          68*****877.9*********8.....336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-112878IPR001471AP2/ERF domain
SMARTSM003801.1E-242992IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-202988IPR016177DNA-binding domain
PROSITE profilePS5103221.7992986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-282988IPR001471AP2/ERF domain
CDDcd000182.03E-263088No hitNo description
PRINTSPR003671.2E-63041IPR001471AP2/ERF domain
PRINTSPR003671.2E-65268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0050826Biological Processresponse to freezing
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MNNDEIILAE MRPKKRAGRR VFKETRHPVY RGIRRRNGDK WVCEIREPTH QRRIWLGTYP  60
SADMAARAHD VAALALRGRS ACLNFADSAW RLPVPESNDQ DVIRRVAAEA AEMFRPADIG  120
GGITVLPFSG DYVDLGSGSG SGSGSEERNS SYGYAEYEEV STTMMRLAEE PLMSPPRSYM  180
DDMTPNVYME EEMCYEDMSL WSYNF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00137DAPTransfer from AT1G12610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13671s0200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0254170.0AC025417.4 Genomic sequence for Arabidopsis thaliana BAC T12C24 from chromosome I, complete sequence.
GenBankAK2281940.0AK228194.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-63-M15.
GenBankAY5608920.0AY560892.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g12610) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303182.11e-125dehydration-responsive element-binding protein 1F
SwissprotQ9LN861e-124DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLR0ID231e-124R0ID23_9BRAS; Uncharacterized protein
STRINGBostr.13671s0200.1.p1e-151(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-111ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]