PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13671s0205.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 178aa    MW: 20131.8 Da    PI: 5.3478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13671s0205.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.0001377973555
                          TS-STCHHHHHHHHHHHHHHH CS
                   HLH 35 skKlsKaeiLekAveYIksLq 55
                           +K s ++ +e+Av+YIk+Lq
  Bostr.13671s0205.1.p 77 EGKRSSSDHVEEAVNYIKDLQ 97
                          6899****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.73E-460101No hitNo description
SuperFamilySSF474591.19E-661119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDFLSSPLFI PDFVYEDELD FSSLLSPSTF QEPNPSIPIT HIEADGKQII CEITAEDDEP  60
KNKRVKRREI EKQRRQEGKR SSSDHVEEAV NYIKDLQKKI KEVSEKRDKI MRSVTHPSST  120
RECSRRSLVS SSSSLLSNCS CVGDTHIDVA VSDTILVFQV FFQVLSQAQC FMLLVTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13671s0205.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603792.11e-56PREDICTED: transcription factor bHLH55
SwissprotQ9LN953e-57BH055_ARATH; Transcription factor bHLH55
TrEMBLA0A178W3V08e-57A0A178W3V0_ARATH; Uncharacterized protein
STRINGBostr.13671s0205.1.p1e-125(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.18e-38bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]