PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13671s0437.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 211aa    MW: 23111.8 Da    PI: 9.3907
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13671s0437.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-056182223
                          EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                          +C++Cgk F ++  L  H++ H
  Bostr.13671s0437.1.p 61 ECQYCGKEFANSQALGGHQNAH 82
                          7******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.30.208.2E-43965IPR020542Aspartate carbamoyltransferase regulatory subunit, C-terminal
SuperFamilySSF576674.66E-65887No hitNo description
PROSITE profilePS5015711.8016087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-56686IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSISPTMSRT GESSSGSSSD KTIKLFGFEL ISGNRSPEIT TAESVSSSTN TTSLTVMKRL  60
ECQYCGKEFA NSQALGGHQN AHKKERLKKK RLQLQARRAS IGYYLTSHQQ PITTAFQGQY  120
KTPSYCAFSS MHVNNNQMGV YNEDWSPMSS QISFGNKNTC QDLNEQSGDM GTLYGVPNMI  180
QFQRDLTSRS GSKRSITSLD LHLGFAGDTA *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin (GA). Acts upstream of GIS, GIS2, ZFP8 and the trichome initiation regulators GL1 and GL3 (PubMed:21803862, PubMed:22301962). Binds the promoter region of ZFP8, which may be a direct target of ZPF5 (PubMed:21803862). Is not involved in the regulation of trichome branching (PubMed:22301962). Modulates root hair initiation and elongation in response to cytokinin and ethylene signals by directly promoting expression of the CAPRICE (CPC) gene (PubMed:22762888). {ECO:0000269|PubMed:21803862, ECO:0000269|PubMed:22301962, ECO:0000269|PubMed:22762888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13671s0437.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin and ethylene. {ECO:0000269|PubMed:22762888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070670.0AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence.
GenBankATHZFPE0.0L39648.1 Arabidopsis thaliana zinc finger protein (ZFP5) mRNA, complete cds.
GenBankAY0863020.0AY086302.1 Arabidopsis thaliana clone 23664 mRNA, complete sequence.
GenBankBT0248400.0BT024840.1 Arabidopsis thaliana At1g10480 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869426.11e-116zinc finger protein 5
SwissprotQ392641e-115ZFP5_ARATH; Zinc finger protein 5
TrEMBLA0A1J3GLN71e-122A0A1J3GLN7_NOCCA; Zinc finger protein 5
TrEMBLA0A1J3J3M71e-122A0A1J3J3M7_NOCCA; Zinc finger protein 5
STRINGBostr.13671s0437.1.p1e-156(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.11e-104zinc finger protein 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Savage LJ,Imre KM,Hall DA,Last RL
    Analysis of essential Arabidopsis nuclear genes encoding plastid-targeted proteins.
    PLoS ONE, 2013. 8(9): p. e73291
    [PMID:24023856]
  3. Sun L, et al.
    GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
    New Phytol., 2015. 206(1): p. 220-30
    [PMID:25640859]
  4. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  5. Kim SY,Hyoung S,So WM,Shin JS
    The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling.
    Plant Mol. Biol., 2018. 96(3): p. 315-326
    [PMID:29335898]