PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.14419s0059.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 398aa    MW: 45250.8 Da    PI: 7.7926
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.14419s0059.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.62.5e-26302383185
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           rW+++ev+aLi  r+++e++ + +  k++ W+e+s++m+erg+ers+k+Ckekwen+nk+y+++ eg +k+ +e+s+t +yf++l
  Bostr.14419s0059.1.p 302 RWPQEEVQALISTRSDVEDKTGIN--KGAIWDEISARMKERGYERSAKKCKEKWENMNKYYRRVMEGGRKQ-PEHSKTRSYFQKL 383
                           8******************99988..99*****************************************95.9**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.619295357IPR017877Myb-like domain
SuperFamilySSF466894.3E-5300385IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-5301357IPR009057Homeodomain-like
PfamPF138378.1E-20301383No hitNo description
CDDcd122032.85E-23301363No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MELLAGDCRK RVGDDFGEDV DPFDGSDGGC GWMYGSRQSG SHGNDDALAT LADLASPPQK  60
LKPIRCGVKP SSSEDQHPLD ILAGTLDRLP EMGFGCFEAP LGSKIADVEQ SGHLTRGFSK  120
DDPPLPIQME FQARNRVSWD SLSLSSSFDS DSDSSPDVRK TVTGKRKRKT RVKLEHFLEK  180
LVGSMMKRQE KMHNQLIKVM EKMEGERIRR EEAWRQQEIE RMKQNEEARK QEMARSLSLI  240
SFIKSVIGHE IEIPKPSEFP QPLQQNLPEQ CEDEKCESAQ TQREIKFRYL SGSGSSSSSG  300
RRWPQEEVQA LISTRSDVED KTGINKGAIW DEISARMKER GYERSAKKCK EKWENMNKYY  360
RRVMEGGRKQ PEHSKTRSYF QKLGNLYKTN SSGEREE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.14419s0059.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256280.0AB025628.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ7.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865109.10.0trihelix transcription factor GTL1
TrEMBLD7MP230.0D7MP23_ARALL; Predicted protein
STRINGBostr.14419s0059.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.10.0Trihelix family protein