PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.1460s0202.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 397aa    MW: 44002.4 Da    PI: 7.8785
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.1460s0202.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-114166126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ++++ C+++ rtG C++G++C+F+H+
  Bostr.1460s0202.1.p 41 PGEPDCSYYIRTGLCRFGSTCRFNHP 66
                         5789*********************9 PP
2zf-CCCH382.8e-1288112327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C ++++tGtCk+G +CkF+H++
  Bostr.1460s0202.1.p  88 QPECEYYLKTGTCKFGVTCKFHHPK 112
                          799********************96 PP
3zf-CCCH36.49e-12134158327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C +f+rtG+Ck+G++CkF+H++
  Bostr.1460s0202.1.p 134 EVDCAYFLRTGHCKFGGTCKFNHPQ 158
                          578********************97 PP
4zf-CCCH37.15.2e-12275301127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+f+++tG Ck+G  CkF+H++
  Bostr.1460s0202.1.p 275 PGQPECQFYMKTGDCKFGTVCKFHHPR 301
                          5789*********************96 PP
5zf-CCCH38.22.3e-12321347127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++lC f++r+G+Ck+G++CkF H++
  Bostr.1460s0202.1.p 321 PGEPLCVFYSRYGICKFGPSCKFDHPM 347
                          589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-54067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7184068IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-84266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-54568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-44666IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-585112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08985113IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-1088112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-689114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-491111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549131159IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5131158IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9134158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6134160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4137157IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5274301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22274302IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8276301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6278303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4280302IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7320347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234320348IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9322347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5323347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4325345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDFNAGVPMS SLSPLMNQDA MWQMNLSSDE TMETGSYPER PGEPDCSYYI RTGLCRFGST  60
CRFNHPLDRE LVIATARMRG EYPERIGQPE CEYYLKTGTC KFGVTCKFHH PKNKAGIAGR  120
VSLNMLGYPL RSNEVDCAYF LRTGHCKFGG TCKFNHPQPQ PTNMMVPNSG QQSYPWSRAS  180
FIASPRWQDP SSYASLIMPQ GVVPVQGWNP YSGQLSSVSP SGTGSDHNYR NLQQNETKES  240
SSLSQGSFSG FNPGSSVPLG GFYALPRENV FPERPGQPEC QFYMKTGDCK FGTVCKFHHP  300
RDRQAPPPDC LLSSIGLPLR PGEPLCVFYS RYGICKFGPS CKFDHPMRVF AYENTASETD  360
EVVETSNGKS RRLSVSETRQ AATTSSGKDT TIDTQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.1460s0202.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296584.20.0zinc finger CCCH domain-containing protein 33
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A178VJ680.0A0A178VJ68_ARATH; ZFN1
STRINGBostr.1460s0202.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]