PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15530s0001.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 143aa    MW: 16138 Da    PI: 4.417
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15530s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.8e-181097196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                    B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                          ff+v+   +  +s+ l +p ++ e+   + + +kt +l+ + g+ W+v +  + k++++++++GW +Fv +n+Lk+g+f+ F +dg   ++
  Bostr.15530s0001.1.p 10 FFSVF--LSQYSSDSLLIPSSYYEHL--PRRLPKTAILMGTGGKIWKVAM--KSKREQVYFEQGWPNFVADNDLKDGEFLSFVFDGY--RR 92
                          56666..56677788********554..456899****************..99****************************98764..33 PP

                          .EEEE CS
                    B3 92 lvvkv 96
                          + v++
  Bostr.15530s0001.1.p 93 YEVSI 97
                          45555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.37E-217103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-208102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-18898No hitNo description
PROSITE profilePS5086313.8468101IPR003340B3 DNA binding domain
PfamPF023621.5E-151089IPR003340B3 DNA binding domain
SMARTSM010194.3E-1710101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MASGDVLPRF FSVFLSQYSS DSLLIPSSYY EHLPRRLPKT AILMGTGGKI WKVAMKSKRE  60
QVYFEQGWPN FVADNDLKDG EFLSFVFDGY RRYEVSIYGH GGCKETRAAI EVEEISDGTE  120
SDNSGSSLES VIQVEEINDD ETK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-22910310104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15530s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414513.13e-84PREDICTED: B3 domain-containing protein At3g06220-like isoform X2
SwissprotQ1PES72e-71Y3622_ARATH; B3 domain-containing protein At3g06220
TrEMBLR0H1D42e-80R0H1D4_9BRAS; Uncharacterized protein
STRINGBostr.15530s0001.1.p1e-102(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.18e-74B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]