PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.15654s0013.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

C3H

Protein Properties

Length: 91aa MW: 10243.7 Da PI: 9.1098

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.15654s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.7	3.4e-12	57	81	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C++++r G+Ck+G++CkF H+ Bostr.15654s0013.1.p 57 DQTICPHYSRLGICKFGPTCKFDHS 81 5789********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.995	9	37	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.11	9	36	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-5	13	37	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.67E-7	55	83	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.122	55	83	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.0E-5	55	82	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-9	57	81	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-5	60	82	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MSDGNFPERP GQPECSYYLI TGNCYLKQNC KYHHPKNITP RQPPCVLNDK GLPLRPDQTI 60 CPHYSRLGIC KFGPTCKFDH STKTTSSSRK *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.15654s0013.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002891416.1	1e-50	zinc finger CCCH domain-containing protein 13
Swissprot	Q3ECU8	1e-45	C3H13_ARATH; Zinc finger CCCH domain-containing protein 13
TrEMBL	D7KC26	3e-49	D7KC26_ARALL; Zinc finger (CCCH-type) family protein
STRING	Bostr.15654s0013.1.p	7e-61	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15633	9	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48195.1	4e-48	C3H family protein

Link Out ? help Back to Top
Phytozome	Bostr.15654s0013.1.p