PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15654s0049.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 421aa    MW: 46426.7 Da    PI: 9.8049
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15654s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05180202223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            Cp Cg++F+  ++L+ H+ + H
  Bostr.15654s0049.1.p 180 ACPQCGEVFPKLETLELHQAVrH 202
                           6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.58179207IPR007087Zinc finger, C2H2
PROSITE patternPS000280179202IPR007087Zinc finger, C2H2
SuperFamilySSF563994.22E-22204416No hitNo description
Gene3DG3DSA:3.90.228.103.4E-11207417IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAPLPFIPEQ THSQTRLSSD AKKKNRKKKT SQPPPQTQTQ KLKQKTVPST SSSSSSWNHI  60
KNLLSCKQIE GPRVHEPSKI TSSSCGSSLC KFSDVIYGNA RVIHRSDHSP ESSNLGQDAR  120
LLTRKPVNRE SSSSVRSNGC GAYTSYSSSK AMHFRKFSGC YECHMIVDPS RYPIAPRVCA  180
CPQCGEVFPK LETLELHQAV RHAVSELGPE DSGRNIVDII FKSSWLRKDS PIYKIERILK  240
VHNTQRTIQR FEDCRDVVKS HAHASTRKEP RSAADGNELL RFYCTTVSCS LGSRGSTSLC  300
SAIPGCRVCT IIRHGFHAKT VRVGNGEGKE EIKGVRTTAS SGRAHDALRC FDQRRAMLVC  360
RVIAGRVRRV QSDVPEDESS GSYDSVAGAA GVYTSLDDLV VFNPRAILPC FVVIYKVSEP  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15654s0049.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288790.0AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019094245.10.0PREDICTED: uncharacterized protein LOC104759815 isoform X2
TrEMBLR0IT110.0R0IT11_9BRAS; Uncharacterized protein
STRINGBostr.15654s0049.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-153C2H2-like zinc finger protein