PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15697s0089.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 449aa    MW: 49260.8 Da    PI: 6.6741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15697s0089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.00033293671255
                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           R +++ ++++ L++l+ +      +K + a++L +A+ YI+ Lq
  Bostr.15697s0089.1.p 329 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYINFLQ 367
                           7788899*********998.....8*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.471317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.60E-5327371No hitNo description
SuperFamilySSF474591.44E-10327380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-8331374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDSANIHQLQ DQLQLVGSSS SSSSLDNNSD PSCYGASSAH QWSPGGISLN SVSLSHNYSN  60
EMLNTRYHNN NTSECMSLST IHNHSLIKQQ EFPLQWPHDQ SSYHHHEGLL KIKEELSSST  120
ISDHQEGISK FTEMLNSPVI TNYLKINEHK DYTEKLLLKT MSSGFPINGD YCSSIPSSSS  180
CPSPSSQSHR GNFSQIYPSV NISSLSESRK MSMDMSNIPR PFDMNMQVLD GRLFEGNVLV  240
PPFNSQEISN LGMSRGSFPP FGLPVHHHLQ QTLHHTSSSP THQMEMFSNE PQTSEEKRHN  300
FLMATKAGEN ASKKPRVESR SSCPPFKVRK EKLGDRIAAL QQLVSPFGKT DTASVLMEAI  360
GYINFLQSQI ETLSVPYMRA SRNRPGKASQ LGSQPQEGDE EETRDLRSRG LCLVPLSCMT  420
YVTGDGGDGG GGVGSGFWPT PPGFGGGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15697s0089.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0123750.0AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870503.10.0transcription factor bHLH110
SwissprotQ9SFZ30.0BH110_ARATH; Transcription factor bHLH110
TrEMBLD7KBT30.0D7KBT3_ARALL; Uncharacterized protein
STRINGBostr.15697s0089.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]