PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15697s0168.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 317aa    MW: 35614.9 Da    PI: 7.8712
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15697s0168.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.11.1e-33772181128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                           lp+G++F+P+d+e++  +L++kv+++k       +   +    +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+
  Bostr.15697s0168.1.p  77 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklihplI---DefipTLEGEnGICYTHPEKLP-GVRKDGQVRHFFHRPSKAYTTGTRKRRK 160
                           799***********9.89*****999966664332...133222443336**********.666777888******************7 PP

                   NAM  78 tk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           ++      + +W++tgk+++vls ++ + g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Bostr.15697s0168.1.p 161 VStdeeghETRWHKTGKTRPVLS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 218
                           33345444788************.8889**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-3668237IPR003441NAC domain
PROSITE profilePS5100532.45277237IPR003441NAC domain
PfamPF023651.4E-1478218IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSWSAGSDDN YDLNLERVSN IDHPSIQLKD QSQSCVTSGP DSKIIVESPV MITCPSCGHK  60
THHQDDQVGS IKDLPSLPAG VKFDPSDKEI LMHLEAKVSS DKRKLIHPLI DEFIPTLEGE  120
NGICYTHPEK LPGVRKDGQV RHFFHRPSKA YTTGTRKRRK VSTDEEGHET RWHKTGKTRP  180
VLSQSGEAGF KKILVLYTNY GRQKKPEKTN WVMHQYHLGN SEDEKDGEPV LSKIFYQTQP  240
RQCGNSTEPK PKNLVNLNRF SYENIQAGFG YEHGGKSEET SQVIRELVVR EGDGSCSFLS  300
FTCDASKGKE SLMKNQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15697s0168.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0864760.0AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478220.10.0PREDICTED: NAC domain-containing protein 10
SwissprotF4HY610.0NAC10_ARATH; NAC domain-containing protein 10
TrEMBLR0GQV50.0R0GQV5_9BRAS; Uncharacterized protein
STRINGBostr.15697s0168.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.10.0NAC domain containing protein 10