PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.15697s0255.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

C3H

Protein Properties

Length: 373aa MW: 44117.7 Da PI: 7.1655

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.15697s0255.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26	1.6e-08	137	163	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++e C f++r+ C yG+ C+F+H+p Bostr.15697s0255.1.p 137 PGEEYCLFYLRYRLCGYGSECRFNHPP 163 57899********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.077	136	163	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.976	136	164	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.67E-5	137	162	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.9E-6	138	163	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4	172	195	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.446	181	196	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MEETEIVNVS FTFDYQGQTP ELRPNELASR SNGRNGRRQE TEPEKRETEH SGFGVSEEGQ 60 IPDHEVSDAD SNARENLKQQ QRVSDVEMQR RSHETESRLW RTARIPDWRA SESKRMLNER 120 TQGRHEHVLS SAYPVRPGEE YCLFYLRYRL CGYGSECRFN HPPLHEFPYR IGRKLDCKVG 180 GACTRSSDCK FYHREERDGA EPVLFNVPSL PMPQGRTPDL RPNDSGRRYE TESRSCPEKR 240 EKEDFGFGIN EVGQFRDHHY SDEDAQGILL QQRPRDVEMR KRSRSPDWRA KTETREHREA 300 EERKNHNIDA QQNLQKQRKR NIEKERREAR LRLHQIRPTV VFDEWSRAIE LMKEFGFTDF 360 EGSFLGRQEI YI*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MEETEIVNVS FTFDYQGQTP ELRPNELASR SNGRNGRRQE TEPEKRETEH SGFGVSEEGQ  60
IPDHEVSDAD SNARENLKQQ QRVSDVEMQR RSHETESRLW RTARIPDWRA SESKRMLNER  120
TQGRHEHVLS SAYPVRPGEE YCLFYLRYRL CGYGSECRFN HPPLHEFPYR IGRKLDCKVG  180
GACTRSSDCK FYHREERDGA EPVLFNVPSL PMPQGRTPDL RPNDSGRRYE TESRSCPEKR  240
EKEDFGFGIN EVGQFRDHHY SDEDAQGILL QQRPRDVEMR KRSRSPDWRA KTETREHREA  300
EERKNHNIDA QQNLQKQRKR NIEKERREAR LRLHQIRPTV VFDEWSRAIE LMKEFGFTDF  360
EGSFLGRQEI YI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.15697s0255.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019091066.1	1e-120	PREDICTED: putative zinc finger CCCH domain-containing protein 10
Swissprot	Q9C7P1	1e-152	C3H10_ARATH; Putative zinc finger CCCH domain-containing protein 10
TrEMBL	A0A178WMN9	1e-117	A0A178WMN9_ARATH; Uncharacterized protein
TrEMBL	D7KDV6	1e-118	D7KDV6_ARALL; Uncharacterized protein
STRING	Bostr.15697s0255.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17915	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29600.1	1e-142	C3H family protein

Link Out ? help Back to Top
Phytozome	Bostr.15697s0255.1.p