PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15697s0404.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 364aa    MW: 39334.9 Da    PI: 8.7823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15697s0404.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000583659123
                          EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                          +kC+ C+k  s+ s ++ H    H
  Bostr.15697s0404.2.p 36 FKCHVCHKKLSTASGMVIHVLQvH 59
                          89*****************87656 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080812.716766IPR003656Zinc finger, BED-type
SMARTSM00355201235IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.39E-51261No hitNo description
PROSITE patternPS0002801435IPR007087Zinc finger, C2H2
SMARTSM003550.0843659IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803859IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGKKKKRATE KVWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTASG MVIHVLQVHK  60
ENVTKVPNAK SGRDSTDIEI YGMQGIPPDV LAAHYGEEEE EPPAKVAKVE IPSTPLGGVV  120
PRPYGMVYPP QQMPGAVRPM YYPGAPMRPG PVWPMLPPRP QQWYPQNPAV SVPPAAHLGY  180
QPQPLFPVQN MGMTLPTSAS VVQPSPATGV TPPGIPSSSP AMPVPQPLFP VVNNSIPSQA  240
SPFSTPLPVG GAQQPSHADA LGSVNAYPPN NSIPGGTNSH SYASGPNTSG PSIGPPPVIA  300
NKAPSNQPNE VYLVWDDEAM SMEERRMSLP KYKVHDETSQ MNSINAAIDR RISESRLAGR  360
MAF*
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15697s0404.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0856120.0AY085612.1 Arabidopsis thaliana clone 16162 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305544.20.0protein SUPPRESSOR OF FRI 4 isoform X2
SwissprotQ9C5G00.0SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLD7KGH70.0D7KGH7_ARALL; Uncharacterized protein
STRINGBostr.15697s0404.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.10.0C2H2 family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  2. Resentini F, et al.
    SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.
    Plant Physiol., 2017. 173(1): p. 155-166
    [PMID:27920160]