PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15697s0410.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 431aa    MW: 48282 Da    PI: 6.6445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15697s0410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000143203531553
                           HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                   HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                           ++++++ +L++++ +      +K + a++L++A+ YI+ 
  Bostr.15697s0410.1.p 320 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 353
                           7899999999999998.....8***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.994305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-9319370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.48E-4319359No hitNo description
Gene3DG3DSA:4.10.280.106.6E-7320362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MLREECNPSS SWWEDVQHHH NDHANSINST SFYDKNSNNN SNANASCEED NLSISTVNAS  60
NRLESSNHHS VSAPDQPASS SDELLHDHVV SSHNHLWSLA FLPGRSLGDQ MMDHHLTSSR  120
NSSTTSELPS FEPACDNGNG WIYDTNQVRY DHSSDQRLSK LTDLVGKHWS IAPPNNPDMN  180
HNLHHHFDHD HSQTNDDVSM YRQALEVKNE ETLCYNNGST GGGGSLFHDP IQSSRSFLDI  240
TLSRPLTDIN PSFKPCFKAL NLSEFNKKEH QTASLATVRL GTTNAGKKKR CEEISDEVSK  300
KAKCGGGSTL SPEKELPKAK LRDKITTLQQ IVSPFGKTDT ASVLQEAITY INFYQEQVKL  360
LSTPYMKNSS IKDPWGGWDR EDHNKRGPKQ HLDLRSRGLC LVPISCTPIT YRDNSATDYW  420
SPSYRGSLYR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15697s0410.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934880.0AB493488.1 Arabidopsis thaliana At1g31050 mRNA for hypothetical protein, partial cds, clone: RAAt1g31050.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307534.10.0transcription factor bHLH111
SwissprotQ9FYJ60.0BH111_ARATH; Transcription factor bHLH111
TrEMBLR0GWX40.0R0GWX4_9BRAS; Uncharacterized protein
STRINGBostr.15697s0410.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80551923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.10.0bHLH family protein