PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15697s0422.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MIKC_MADS
Protein Properties Length: 155aa    MW: 18016.7 Da    PI: 9.818
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15697s0422.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.78.6e-25959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ie+k +rqvtf+kRr+ ++KKA+ELSvLCd+   +iifs ++kly+++s
  Bostr.15697s0422.1.p  9 KKIEDKLRRQVTFAKRRKSLIKKAHELSVLCDVHLGLIIFSYSNKLYDFCS 59
                          68***********************************************96 PP
2K-box16.73.1e-07981461972
                 K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                           +  + + +eienL+ ++  + G +L+ L++ eL+     Le+sl++ R++K++ 
  Bostr.15697s0422.1.p  98 KTKESMMREIENLKLNLQLYDGHGLNLLTYDELH-----LESSLQHARARKQQQ 146
                           56678999*************************5.....899999999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.38161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-30160IPR002100Transcription factor, MADS-box
CDDcd002656.82E-36280No hitNo description
SuperFamilySSF554554.32E-26376IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-23323IPR002100Transcription factor, MADS-box
PfamPF003197.7E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-233859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030308Biological Processnegative regulation of cell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048530Biological Processfruit morphogenesis
GO:0080060Biological Processintegument development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MRKGKIVIKK IEDKLRRQVT FAKRRKSLIK KAHELSVLCD VHLGLIIFSY SNKLYDFCSN  60
STSMENLIMR YQMEKEGHAT PTADHSFHPD HCSSNCVKTK ESMMREIENL KLNLQLYDGH  120
GLNLLTYDEL HLESSLQHAR ARKQQQQQQT NKQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-17182180MEF2 CHIMERA
6byy_B5e-17182180MEF2 CHIMERA
6byy_C5e-17182180MEF2 CHIMERA
6byy_D5e-17182180MEF2 CHIMERA
6bz1_A6e-17182180MEF2 CHIMERA
6bz1_B6e-17182180MEF2 CHIMERA
6bz1_C6e-17182180MEF2 CHIMERA
6bz1_D6e-17182180MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of fruit growth. Contributes to integument development. Controls organ size via cell expansion (PubMed:20088901). Involved in the regulation of longitudinal growth of the fruit evenly throughout the radial axis (PubMed:20598091). Functions redundantly with TT16/AGL32 to repress nucellus growth and promote its degeneration (PubMed:27233529). {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091, ECO:0000269|PubMed:27233529}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00172DAPTransfer from AT1G31140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15697s0422.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934891e-135AB493489.1 Arabidopsis thaliana At1g31140 mRNA for hypothetical protein, partial cds, clone: RAAt1g31140.
GenBankFR6713671e-135FR671367.1 Arabidopsis thaliana mRNA for putative MADS domain protein AGL63 (GOA), ecotype Col-0.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306362.22e-85agamous-like MADS-box protein AGL63
SwissprotQ9SA074e-83AGL63_ARATH; Agamous-like MADS-box protein AGL63
TrEMBLA0A2H4FR435e-84A0A2H4FR43_9BRAS; MADS-box transcription factor AGL63
STRINGBostr.15697s0422.1.p1e-111(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16860910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31140.23e-79GORDITA
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]