PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15697s0466.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 260aa    MW: 29884.3 Da    PI: 8.8009
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15697s0466.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.31.1e-211113020127
                   NAM  20 kkkvegkkleleevikevdiykvePwdLp.k..........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                            +k++g++  +e +i+evdi+k++Pw+L+ +          k+k+++  wyfFs+r+++    +r+nr+t sg Wk t +  +v+++  
  Bostr.15697s0466.1.p  11 PNKIQGNTWLVEGAINEVDICKFDPWNLRcNfcfcfwgiksKIKSKDCMWYFFSRRATR----DRQNRKTPSGKWKVTREPVDVKDNvg 95 
                           57899999888889**************854899***99887777888******99765....69********************9999 PP

                   NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyr 127
                                +g+++g k+ Lvf   ++ ++   +Wv+hey+
  Bostr.15697s0466.1.p  96 twcgiRGKKIGHKRCLVFL--NSGNPIDPNWVIHEYH 130
                           999999999**********..4555669********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.6741151IPR003441NAC domain
SuperFamilySSF1019411.44E-2212151IPR003441NAC domain
PfamPF023656.1E-1048130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSSSVTLSLF PNKIQGNTWL VEGAINEVDI CKFDPWNLRC NFCFCFWGIK SKIKSKDCMW  60
YFFSRRATRD RQNRKTPSGK WKVTREPVDV KDNVGTWCGI RGKKIGHKRC LVFLNSGNPI  120
DPNWVIHEYH NTVVLPEHLR TTYVICRLEY KGDDMSILSA NAIDPTPSFV ANMTNSEGHG  180
PLHNFEAQEQ QKLHLQGKEK MKNTQESECE GEMAEDSIKK TPSTKTVKQK WIFLEEISQR  240
NSQWIIIGFL LFISVIGSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15697s0466.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892089.16e-61NAC domain-containing protein 1
SwissprotQ0WV961e-52NAC1_ARATH; NAC domain-containing protein 1
TrEMBLD7KQC41e-59D7KQC4_ARALL; ANAC001
STRINGBostr.15697s0466.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.15e-55NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]