PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0056.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ARR-B
Protein Properties Length: 311aa    MW: 36268.2 Da    PI: 6.9164
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.22.7e-21263311251
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                            r++W ++LH++Fv+av+ L G++kA+Pk+ile+m+v+ +++e+v+SHLQ
  Bostr.15774s0056.1.p 263 RRIVWDHKLHKKFVDAVNCL-GKDKAVPKKILEIMNVEYISRENVASHLQ 311
                           699*****************.****************************9 PP
2Response_reg48.45.1e-17821891108
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl+ d++p+ ++ll++ l++ +y +v+ +++ +ea+ ll +++  +D+ ++ ++ ++ d +++++e  ++  +l ii+++  ++ + ++
  Bostr.15774s0056.1.p  82 VLVFDEDPDYLQLLERHLQEFQY-RVTICSEEDEAMYLLLNHRsrFDIAMIQVNNSDGDMFRFISEFGSKM-DLSIIIISKDDSVQSVI 168
                           8999*******************.***************888888**********************6654.8**************** PP

                           HHHHTTESEEEESS--HHHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeelv 108
                           + ++ Ga+d+l Kp+ pe+l+
  Bostr.15774s0056.1.p 169 KWMRNGASDYLIKPIRPEDLR 189
                           *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.9E-2178224No hitNo description
SuperFamilySSF521723.27E-2278208IPR011006CheY-like superfamily
SMARTSM004483.1E-680192IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.20781196IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.9E-1182189IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.40E-1283189No hitNo description
Gene3DG3DSA:1.10.10.601.5E-19260311IPR009057Homeodomain-like
SuperFamilySSF466896.27E-13260311IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-20263311IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAEKLDHGGV PASDDDGEPY RDHPNFSDLF PSNFPKGLRV LVFDEDLVYL LILDRHYQEF  60
QYQDLPNFSN LFPSNFYKGL RVLVFDEDPD YLQLLERHLQ EFQYRVTICS EEDEAMYLLL  120
NHRSRFDIAM IQVNNSDGDM FRFISEFGSK MDLSIIIISK DDSVQSVIKW MRNGASDYLI  180
KPIRPEDLRI IFKHVVKKIR GRRSVVTLEA GEKAAGEKLS SVGDSNIRNP NKRKRSTCLN  240
AEVNEKDHHD QDRVFAYSSK NRRRIVWDHK LHKKFVDAVN CLGKDKAVPK KILEIMNVEY  300
ISRENVASHL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-14258311154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0056.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087608.11e-137PREDICTED: putative two-component response regulator-like APRR4
SwissprotQ9FJ161e-124APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLD7MNQ41e-130D7MNQ4_ARALL; Uncharacterized protein
STRINGBostr.15774s0056.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.11e-113pseudo-response regulator 4