PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0177.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 187aa    MW: 21053.5 Da    PI: 7.7266
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0177.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.21.4e-1841325128
                   NAM   5 frFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           + F+P + el+ +yL+kk+++++ l +e+ i+ev+i+++eP  +p+ ++  +++ w+  s            +ra k+g Wk tgk+  
  Bostr.15774s0177.1.p   4 YTFNPPEYELIIKYLNKKITEEDdLGAESEINEVNICHHEPAGIPALARMpSSHTWHIIS------------RRASKTGHWKITGKSSM 80 
                           68****************999985666666***************533221334555544............4566789********** PP

                   NAM  92 vlskkgelvglkktLvfy...............kgrapkgektdWvmheyrl 128
                           v++ +g+ +g+kk L f                + + ++ +k++W++he++ 
  Bostr.15774s0177.1.p  81 VKDVDGNIIGCKKYLGFKetkknssssssfpssSSTGRQQNKSNWIIHEFHS 132
                           ******************77666665555554424444455*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.5981153IPR003441NAC domain
PfamPF023652.3E-124131IPR003441NAC domain
SuperFamilySSF1019411.31E-214139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSTYTFNPPE YELIIKYLNK KITEEDDLGA ESEINEVNIC HHEPAGIPAL ARMPSSHTWH  60
IISRRASKTG HWKITGKSSM VKDVDGNIIG CKKYLGFKET KKNSSSSSSF PSSSSTGRQQ  120
NKSNWIIHEF HSSIQHPNKM QNDNISVNDY GGEFLGGGFE DIFPPFQSTG LLDQPYYSIT  180
SYRTWR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0177.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465303.14e-53PREDICTED: NAC domain-containing protein 69-like, partial
TrEMBLA0A397XHE82e-52A0A397XHE8_BRACM; Uncharacterized protein (Fragment)
STRINGBostr.15774s0177.1.p1e-137(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.11e-47NAC domain containing protein 49