PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0178.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 235aa    MW: 26609 Da    PI: 8.5839
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0178.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.48.1e-2541455128
                   NAM   5 frFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           + F+P + el+ +yL+kk++++   l +e+ i+ev+i+++eP ++ + +k  +++ wy  s+ ++ + + +r++ra ++g+Wk tgk++
  Bostr.15774s0178.1.p   4 YTFNPPEYELIIKYLNKKITKEGddLGAESEINEVNICHHEPAEISALAKIpSSQTWYIISPVERLNGRHQRRRRASRTGIWKVTGKKT 92 
                           68*****************999854555566**************95333335679********************************* PP

                   NAM  91 evlskkgelvglkktLvfy...............kgrapkgektdWvmheyrl 128
                            v++ +g+ +g k+ L f                + + ++ +k++W++he++ 
  Bostr.15774s0178.1.p  93 MVKDINGKIIGFKRYLGFKetkknysssssfpssSSTGRQQNKSNWIIHEFHS 145
                           *******************77766666665555424445555*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.8691163IPR003441NAC domain
SuperFamilySSF1019415.89E-294162IPR003441NAC domain
PfamPF023659.2E-144144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSTYTFNPPE YELIIKYLNK KITKEGDDLG AESEINEVNI CHHEPAEISA LAKIPSSQTW  60
YIISPVERLN GRHQRRRRAS RTGIWKVTGK KTMVKDINGK IIGFKRYLGF KETKKNYSSS  120
SSFPSSSSTG RQQNKSNWII HEFHSSIDHP KKEDFVLCKL MKNEGAPPSG AVAEAFPAAT  180
SPIISPYAMQ NDDISVYDYG GYFLDVLGNT FTPFQNTDLL DQPYYSHDVL ETWR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0178.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511050.12e-57PREDICTED: NAC domain-containing protein 62 isoform X1
RefseqXP_018511051.11e-57PREDICTED: NAC domain-containing protein 62 isoform X2
TrEMBLA0A087HK382e-56A0A087HK38_ARAAL; Uncharacterized protein
STRINGBostr.15774s0178.1.p1e-176(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.17e-42NAC domain containing protein 49