PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0197.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-YC
Protein Properties Length: 194aa    MW: 21273.2 Da    PI: 5.845
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0197.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC155.77.9e-49351331100
                 NF-YC   1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                           q++++w++q+  a+d++nh++Plarikki+k d+dv+m+saeaP+llskace+fi++lt+rswlh+ en+r+t+++sdi+ av+r++ f
  Bostr.15774s0197.1.p  35 QVRNYWIEQVM-ASDVRNHQFPLARIKKIMKLDPDVHMVSAEAPILLSKACEMFIVDLTMRSWLHTVENTRQTIHRSDISVAVSRSFDF 122
                           789*****985.68*************************************************************************** PP

                 NF-YC  90 dflvdivprde 100
                           dflvd+ prde
  Bostr.15774s0197.1.p 123 DFLVDVLPRDE 133
                           *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.09E-2747133IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.7E-3147116IPR009072Histone-fold
PfamPF008081.1E-1853116IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
LSHPTRGKLV SWFSISYSQP LPSPSYSQPL PYSLQVRNYW IEQVMASDVR NHQFPLARIK  60
KIMKLDPDVH MVSAEAPILL SKACEMFIVD LTMRSWLHTV ENTRQTIHRS DISVAVSRSF  120
DFDFLVDVLP RDESVAAAAA DPVAMPHQDD GVLPPGMVIG HPVADCNGMY PPPPQTQEWP  180
AAPGEIGGSS GGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-35471311195NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0197.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199858.14e-75nuclear factor Y, subunit C7
SwissprotQ9FGP84e-76NFYC7_ARATH; Nuclear transcription factor Y subunit C-7
TrEMBLA0A178UBR16e-74A0A178UBR1_ARATH; NF-YC7
STRINGBostr.15774s0197.1.p1e-141(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2021046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50470.11e-68nuclear factor Y, subunit C7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]