PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0198.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-YC
Protein Properties Length: 163aa    MW: 17914 Da    PI: 4.6457
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0198.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC170.12.6e-5326124199
                 NF-YC   1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                           q++++w++q+e+++dfkn++lPla+ikki+kad+dv+m+saeaP+l++kace fi++lt+rswlhaeenkr+tl+ksdi++av++++++
  Bostr.15774s0198.1.p  26 QIRNYWIEQMENVSDFKNRQLPLAKIKKIMKADPDVHMVSAEAPILFAKACEKFIVDLTMRSWLHAEENKRHTLQKSDISDAVASSFTY 114
                           799************************************************************************************** PP

                 NF-YC  90 dflvdivprd 99 
                           dfl+d+vp+d
  Bostr.15774s0198.1.p 115 DFLLDVVPKD 124
                           ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.73E-308117IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.9E-3236108IPR009072Histone-fold
PfamPF008081.7E-1845108IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MENNNGNNQP PPSYSQPPQT ASSNPQIRNY WIEQMENVSD FKNRQLPLAK IKKIMKADPD  60
VHMVSAEAPI LFAKACEKFI VDLTMRSWLH AEENKRHTLQ KSDISDAVAS SFTYDFLLDV  120
VPKDADPACV PQYNYPPGMY APPPAGEGEY EAGENGGNGG GN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-3933123595NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0198.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256191e-121AB025619.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBA10.
GenBankAB4937851e-121AB493785.1 Arabidopsis thaliana At5g50480 mRNA for hypothetical protein, partial cds, clone: RAAt5g50480.
GenBankBT0147831e-121BT014783.1 Arabidopsis thaliana At5g50480 gene, complete cds.
GenBankBT0150061e-121BT015006.1 Arabidopsis thaliana At5g50480 mRNA, complete cds.
GenBankCP0026881e-121CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865810.11e-80nuclear transcription factor Y subunit C-6
SwissprotQ9FGP72e-76NFYC6_ARATH; Nuclear transcription factor Y subunit C-6
TrEMBLD7MQ853e-79D7MQ85_ARALL; Uncharacterized protein
STRINGBostr.15774s0198.1.p1e-118(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50480.17e-70nuclear factor Y, subunit C6
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]