PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.15774s0200.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

NF-YC

Protein Properties

Length: 186aa MW: 20203.7 Da PI: 4.3237

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.15774s0200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	157.5	2.1e-49	17	116	1	100
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 qlks+w k+++ + d+knhe+Plarik+i+k+d+dv+mi+ eaP+l+ska e+f+++lt+rsw ha+enkr t+++sdiaaav+rt + Bostr.15774s0200.1.p 17 QLKSYWLKEMKGDLDLKNHEFPLARIKRIMKFDPDVTMIAGEAPILFSKASEMFVMDLTMRSWFHAQENKRITIQRSDIAAAVARTYTM 105 89************************************************************************************* PP NF-YC 90 dflvdivprde 100 dfl+d+vp+de Bostr.15774s0200.1.p 106 DFLLDVVPEDE 116 ******997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	9.78E-28	2	108	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.5E-30	31	99	IPR009072	Histone-fold
Pfam	PF00808	3.4E-17	36	99	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MENNNGNHQQ PPQDNPQLKS YWLKEMKGDL DLKNHEFPLA RIKRIMKFDP DVTMIAGEAP 60 ILFSKASEMF VMDLTMRSWF HAQENKRITI QRSDIAAAVA RTYTMDFLLD VVPEDEPEAA 120 DEDPVAMSDH DDGELPPGMV IGTPVVGGLG IYAPQPQKQA WAGAWTAAPG VGVDAAEGNG 180 GNGGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	8e-36	23	113	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.15774s0200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002865814.1	4e-92	nuclear transcription factor Y subunit C-8
Swissprot	Q4PSE2	8e-84	NFYC8_ARATH; Nuclear transcription factor Y subunit C-8
TrEMBL	D7MQ91	8e-91	D7MQ91_ARALL; Uncharacterized protein
STRING	Bostr.15774s0200.1.p	1e-135	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17675	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27910.1	2e-77	nuclear factor Y, subunit C8

Link Out ? help Back to Top
Phytozome	Bostr.15774s0200.1.p

Publications ? help Back to Top
Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]