PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0325.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 205aa    MW: 22890.1 Da    PI: 9.787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0325.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.2e-072879255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                          +  h  +Er+RR+++   f+ Lr+ lP       ++K   ++ +  Av +Ik+ q
  Bostr.15774s0325.1.p 28 KLLHRNIERQRRQEMAILFASLRSQLPVkY---IKGKRAMSDHVNGAVTFIKDTQ 79
                          567999**********************77...99999999**********9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.4E-1223102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-62483No hitNo description
PROSITE profilePS5088810.6712678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-52879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-72896IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDPCNNPKKT RHQSHMPHIG DETKKEKKLL HRNIERQRRQ EMAILFASLR SQLPVKYIKG  60
KRAMSDHVNG AVTFIKDTQT RIKELSARRD ELKREIGDPT SQTGSGSGSG SSRSEPASVM  120
VQPSVSGLEV VVSSSASGLE AWPLSRVLEV LHEQGLEVIS SLTARVNERL MYTIQVEVNS  180
FGCYDLAWLQ QKLIEELILS STRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0325.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937890.0AB493789.1 Arabidopsis thaliana At5g51790 mRNA for hypothetical protein, partial cds, clone: RAAt5g51790.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442686.11e-131PREDICTED: transcription factor bHLH120
SwissprotQ9FLI01e-126BH120_ARATH; Transcription factor bHLH120
TrEMBLA0A1P8BH391e-124A0A1P8BH39_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGBostr.15774s0325.1.p1e-149(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-115bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]