PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0333.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MIKC_MADS
Protein Properties Length: 175aa    MW: 19973.1 Da    PI: 9.9047
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0333.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.3e-27959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien + rqvtfskRr g+lKKA+ELSvLCda+va +ifs++g+lye++s
  Bostr.15774s0333.1.p  9 KKIENVTSRQVTFSKRRSGLLKKAHELSVLCDAQVAAMIFSQKGRLYEFAS 59
                          68***********************************************86 PP
2K-box38.16.4e-14741431483
                 K-box  14 aeslqqelakLkk..eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                            e+   e+  +++  +ie L+  +R+l+G++L  +s keLq++ +q+eksl  +Rs+K  l+ +++++l+ k
  Bostr.15774s0333.1.p  74 REYFGAESHSIEQyvQIEVLEVHNRKLMGQSLAYCSAKELQEIATQIEKSLHIVRSTK--LYEDELKKLKAK 143
                           555556666665544899***999*******************************987..778888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.371161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-30383IPR002100Transcription factor, MADS-box
CDDcd002651.75E-39373No hitNo description
PRINTSPR004041.4E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1175144IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRSGLLK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS  60
DIQKTIKRYA EYKREYFGAE SHSIEQYVQI EVLEVHNRKL MGQSLAYCSA KELQEIATQI  120
EKSLHIVRST KLYEDELKKL KAKVGERPMG MSSGNKEKED VETDLFIGLP KSRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n6j_A6e-213102293Myocyte-specific enhancer factor 2B
1n6j_B6e-213102293Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0333.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412213e-97AY141221.1 Arabidopsis thaliana MADS-box protein AGL72 mRNA, complete cds.
GenBankDQ4470613e-97DQ447061.1 Arabidopsis thaliana clone pENTR221-At5g51860 MADS-box protein (At5g51860) mRNA, complete cds.
GenBankDQ6533603e-97DQ653360.1 Arabidopsis thaliana clone 0000017130_0000012002 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443997.11e-107PREDICTED: MADS-box protein AGL72
RefseqXP_019087581.11e-107PREDICTED: MADS-box protein AGL72
SwissprotQ9FLH55e-99AGL72_ARATH; MADS-box protein AGL72
TrEMBLD7MRJ71e-99D7MRJ7_ARALL; MADS-box protein
STRINGBostr.15774s0333.1.p1e-124(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.21e-103MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]