PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0338.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TCP
Protein Properties Length: 300aa    MW: 32041.1 Da    PI: 6.5164
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0338.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.11.1e-3657138383
                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                           + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++++a ++  +++ +  +s
  Bostr.15774s0338.1.p  57 APKRPTKDRHTKVEGRGRRIRMPAGCAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTIPAIAVsVNGTLKIPTS 138
                           5699***********************************************************9999955542222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.3E-3062150IPR005333Transcription factor, TCP
PROSITE profilePS5136927.69862116IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MESNQEGKAI QEIDENVDQV TMTHLFDPDP KTNPGLLMKK EAVEILQPMM TNSLKPAPKR  60
PTKDRHTKVE GRGRRIRMPA GCAARIFQLT RELGHKSDGE TIRWLLERAE PAIIEATGTG  120
TIPAIAVSVN GTLKIPTSSP NDGGGDGDGD LTRKRRKRNC TSEFVDVNEH DSCHSSVTSG  180
LAPITASNYG VNITNVNTQG LVPFWPMGMG TAFVTGGPNQ MGQMWAIPTV ASAPFLNVGT  240
RPVSSYVSNA SPAAEPQIES SGGGATQSLR DLSLEIYDKK ELQFLGGSGN ISPSSCHET*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0338.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256230.0AB025623.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJM18.
GenBankAK1185790.0AK118579.1 Arabidopsis thaliana At5g51910 mRNA for unknown protein, complete cds, clone: RAFL19-81-E01.
GenBankBT0087790.0BT008779.1 Arabidopsis thaliana At5g51910 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442701.11e-179PREDICTED: transcription factor TCP19-like
SwissprotQ9LT891e-161TCP19_ARATH; Transcription factor TCP19
TrEMBLR0GMZ11e-177R0GMZ1_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.15774s0338.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-164TCP family protein