PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0345.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 438aa    MW: 47417.6 Da    PI: 7.7162
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0345.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06113134426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           + C+f+   G C yGd+C++ H+
  Bostr.15774s0345.1.p 113 KVCNFWVD-GNCTYGDKCRYLHC 134
                           68**9*99.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00183055IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.0843056IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286109136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6109133IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5111135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5113131IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4113134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.5E-45132428IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.5E-5140179IPR001680WD40 repeat
SuperFamilySSF509784.49E-46140431IPR017986WD40-repeat-containing domain
PfamPF004000.0011143179IPR001680WD40 repeat
PROSITE profilePS5008213.316147188IPR001680WD40 repeat
PROSITE profilePS5029420.039147396IPR017986WD40-repeat-containing domain
PROSITE patternPS006780166180IPR019775WD40 repeat, conserved site
PRINTSPR003201.9E-6166180IPR020472G-protein beta WD-40 repeat
SMARTSM003206.6219256IPR001680WD40 repeat
SMARTSM003200.025263300IPR001680WD40 repeat
PfamPF004000.08267300IPR001680WD40 repeat
PROSITE profilePS5008211.511270309IPR001680WD40 repeat
PRINTSPR003201.9E-6287301IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4303340IPR001680WD40 repeat
PfamPF004000.0046305339IPR001680WD40 repeat
PRINTSPR003201.9E-6327341IPR020472G-protein beta WD-40 repeat
SMARTSM003204.9344387IPR001680WD40 repeat
SMARTSM003203.4390427IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDFDLNGGNK RVFNRLGGGG GSTRPMTPTD TRQKVCFHWR AGRCNRSPCP YLHRELPGPG  60
PGPGQGPGYT NKRVAEESGF AGPIHRRGPG FNGNSNSSWG RFGGNRTVTK TEKVCNFWVD  120
GNCTYGDKCR YLHCWSKGDS FSLLTQLDGH EKLVSGIALP SGSDKLYTGS KDETLRVWDC  180
TSGQCTGVLK LGGEVGCVLS EGPWLLVGMP NLVKAWNIET NADQSLNGPV GQVYSLVVGT  240
DLLFAGTQDG SILAWRYNAA TNCFEPAASL TGHTLAVVTL YVGANRLYSG SMDKSIKVWS  300
LDNLQCIQTL TDHTSVVMSL ICWDQFLLSC SLDNTVKIWA AIEGGNLEVT YTHKEEHGVL  360
ALCGVHDAEA KPVLLCSCND NTLRLYDLPS FTERGKIFAK QEIRSIQIGP GGIFFTGDGT  420
GQVKVWKWRT EPTAASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A9e-211444308323Tako8
6g6n_A9e-211444308323Tako8
6g6n_B9e-211444308323Tako8
6g6n_C9e-211444308323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0345.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520640.0AJ252064.1 Arabidopsis thaliana partial mRNA for zfwd2 protein (zfwd2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001318784.10.0Transducin/WD40 repeat-like superfamily protein
RefseqNP_200011.10.0Transducin/WD40 repeat-like superfamily protein
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLV4LHV70.0V4LHV7_EUTSA; Uncharacterized protein
STRINGBostr.15774s0345.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein