PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0347.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 398aa    MW: 45813 Da    PI: 8.4451
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0347.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016152175123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           y C+ Cg+ ++++ +Lk+H +  H
  Bostr.15774s0347.1.p 152 YICGVCGRKCKTNLDLKKHFKQlH 175
                           89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.575152180IPR007087Zinc finger, C2H2
PROSITE patternPS000280154175IPR007087Zinc finger, C2H2
CDDcd061671.64E-10166306No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSLFCNSIET LYPKPFLSHK SHFFTFSDSK FQNPKFTSFP LHRLRPIKSC LKSASSSEID  60
MVRNKEGVFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK VAEKLGRVVE ISAYANRHAF  120
IHLPHWIVEE RRERRNLDFM ERKGEVTPIE PYICGVCGRK CKTNLDLKKH FKQLHERERQ  180
KKVNRMRSLK GKKRQKFKER YVSGNEKYNE AARRLLTPKV GYGLEAELRR AGVYVKTVED  240
KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KGFSDMLRKA READLGTLVV SDRDRALGRH  300
ADLWVPWIGV EKGEIGEKDL IPGKRPRFEE EESKVFSGGD ELFSLSYDED ERAEMTVESD  360
GFGRFNVSAF SEDEWVEDEG DFALSDSSDD SDDELGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0347.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0854060.0AY085406.1 Arabidopsis thaliana clone 150246 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640872.10.0uncharacterized protein LOC111831215
TrEMBLR0GTZ40.0R0GTZ4_9BRAS; Uncharacterized protein
STRINGBostr.15774s0347.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein