PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18320s0001.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ARR-B
Protein Properties Length: 412aa    MW: 46975.7 Da    PI: 5.9145
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18320s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.72e-21213271155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelm....kvkgLtlehvkSHLQkYRl 55 
                           kpr+ Wt+eLH++F  ave+ G   kA+Pk+il++m    +v+gLt+++++ HLQkYRl
  Bostr.18320s0001.1.p 213 KPRITWTSELHQKFEVAVEKFGSLGKAVPKQILKCMqedlNVQGLTRNNIANHLQKYRL 271
                           79*********************************95555699***************8 PP
2Response_reg65.23.1e-22451493107
                           EESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
          Response_reg   3 ivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                           +vd + + + l+++++ +  y +v+  ++geea++ l +++  +Dl++ D+ mp+++Gl++l +i +e  +lp+++++   ++e+a + 
  Bostr.18320s0001.1.p  45 LVDADSNSLLLMKNLMAQYSY-QVTKYENGEEAMAFLMKSKheIDLVIWDLHMPDINGLDALNTIGKEM-DLPVVIMSHVHKKETAMKS 131
                           78889999999**********.***************666667**********************6644.7*******9999******* PP

                           HHTTESEEEESS--HHHH CS
          Response_reg  90 lkaGakdflsKpfdpeel 107
                            k Ga dfl+Kp+++e +
  Bostr.18320s0001.1.p 132 TKHGACDFLVKPVSKEVI 149
                           ************998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-2940194No hitNo description
SuperFamilySSF521721.99E-2740161IPR011006CheY-like superfamily
SMARTSM004485.3E-1641152IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011035.69842157IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-1945149IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.68E-1945157No hitNo description
Gene3DG3DSA:1.10.10.601.8E-21210272IPR009057Homeodomain-like
SuperFamilySSF466892.51E-14211274IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-18213271IPR006447Myb domain, plants
PfamPF002491.8E-7217270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSDSLNILDE NSRNLRKELP CDNEIESPIN DDDEVFSTTS IRVRLVDADS NSLLLMKNLM  60
AQYSYQVTKY ENGEEAMAFL MKSKHEIDLV IWDLHMPDIN GLDALNTIGK EMDLPVVIMS  120
HVHKKETAMK STKHGACDFL VKPVSKEVIA VLWRHVFRKR MSKYGLDKTG ESDTVESDPD  180
EYDDFGKDNL YQSNEEGSKN TSDQKGEKSS SKKPRITWTS ELHQKFEVAV EKFGSLGKAV  240
PKQILKCMQE DLNVQGLTRN NIANHLQKYR LNPNKRARTH QETQDDFGWH NAAPDPPLAT  300
SNPVLRSSVN LHARASYLMN DQAAPRASYY LSMNNNYFMT NFTYIGQFQQ PQQQFHPSLN  360
LPSMLTKQEP RNVSSAMENS DQLIYDLTFP FGHDECFPPA GFNNFDQFGR N*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18320s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1626511e-117AL162651.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9.
GenBankCP0026861e-117CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878470.10.0putative two-component response regulator ARR20
SwissprotQ9LZJ80.0ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLD7LT850.0D7LT85_ARALL; Two-component response regulator
STRINGBostr.18320s0001.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-156response regulator 20