PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.18351s0037.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 225aa MW: 25705.3 Da PI: 10.3757

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.18351s0037.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.6	4.6e-18	19	113	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 ffk l dv+++++ lp +f+++++ ke s ++++++++grsWev + k+++ ++ ++GW++Fv++n f++++++g++ Bostr.18351s0037.1.p 19 FFKMLQGIDVSSENMRALPHDFVRSFSD-KELSCKMKIRTQWGRSWEVGI--FKNPRFyFMEKSGWEKFVRDNAFGHSKFITLTHKGKM 104 8999999**************99965.57899************..999999556669*******************9999 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v +f++ Bostr.18351s0037.1.p 105 QF--TVNIFKQ 113 99..9999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.7E-18	13	115	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.33E-18	14	118	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.95E-16	18	112	No hit	No description
SMART	SM01019	1.5E-16	19	114	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.548	19	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.3E-16	19	113	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MTRNPEFVRG KEERNNESFF KMLQGIDVSS ENMRALPHDF VRSFSDKELS CKMKIRTQWG 60 RSWEVGIFKN PRFYFMEKSG WEKFVRDNAF GHSKFITLTH KGKMQFTVNI FKQDGKEMIQ 120 PPQSAAFLAS SSSIKIESEE NDKKEEKVVS SHGRKLKFGK KPAEESQNSK RAKKLVCVRR 180 GSAGASSSTG AKFTIFIKKS YISADTEICC KVESNVQDPS SRWE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.18351s0037.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013394	2e-71	AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22.
GenBank	CP002688	2e-71	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010488975.1	1e-104	PREDICTED: B3 domain-containing protein At2g16210-like
Swissprot	Q5BPT7	2e-83	Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBL	D7L143	7e-98	D7L143_ARALL; Transcriptional factor B3 family protein
STRING	Bostr.18351s0037.1.p	1e-164	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16210.2	2e-75	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.18351s0037.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]